Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1700 ATGCAGCAGATGGGGGTTATGCAACAACAAACGGTTTCAATAGCAAAGGCATGCATTATTGCTTCCCTTAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCACAATATTATCCTCGTTTGACTGCCATTGACAACATACACCTTCTTCCCACTCTTATGTCCAGATGGAGACCTCCGGAGCTGACGGGTTTCCTGTGGTCAGCGGCAGGAGGTTCTGCAATTCAGGCTGAGCTTCTAGCCATGCGAATGGGCTTGGAATTAGCTTGGAATTTGGGCTATAGGAAGATCCTCTGTGAGACTGATTGTGCTACTGTGCTTAGTCTCGTCAAGGATGCCAGCAACTTTACGGTTTTGCCACTGGCTGAGGAGGTGGCGAGATTGATAGCTCGGGCATGGGAGGTCAAGGTGGAGAAAATTCCAAGAGAGTGTAATGCAGCGGCTGACTGTATGGCCCGCCACGCATCTAGTGGAGAGGAGCAGAGGTGCTGGCTTCTGCTTCTTCACGGTGGCCTGGGCATTGACGATGGTTGTAGCGGAAGCTATGGCGTTGCGGTGGGCGTTGTAGCTATCATTGGAGCTGGGTTTTCATGA 603 0.5108 MQQMGVMQQQTVSIAKACIIASLNARTSVLACANPSGSQYYPRLTAIDNIHLLPTLMSRWRPPELTGFLWSAAGGSAIQAELLAMRMGLELAWNLGYRKILCETDCATVLSLVKDASNFTVLPLAEEVARLIARAWEVKVEKIPRECNAAADCMARHASSGEEQRCWLLLLHGGLGIDDGCSGSYGVAVGVVAIIGAGFS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1700 200 CDD RNase_H_like 67 156 IPR044730 -
Lja1g1700 200 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 6 60 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g1700 200 Gene3D - 64 166 IPR036397 GO:0003676
Lja1g1700 200 ProSiteProfiles MCM family domain profile. 6 60 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1700 200 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 6 60 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g1700 200 Gene3D - 4 61 IPR027417 -
Lja1g1700 200 Pfam Reverse transcriptase-like 76 158 IPR002156 GO:0003676|GO:0004523
Lja1g1700 200 Pfam MCM P-loop domain 5 60 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1700 200 SUPERFAMILY Ribonuclease H-like 71 161 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1700 Lja-Chr1 18735744 18740234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1700 6 60 Core DNA Replication Machinery Family AT2G16440 81.818 1.80e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1700 K02212 - lja:Lj2g3v0777180.2 92.8189