Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1699 ATGAATGATCACTTTCCAGATACCACCCCTGAAGAGCTTATTGCGTTTTCGGATAAGCATATTGTGAGGCTCCCGGAGACTCCTGATGAGATACCTGGAGGAGGAATGCTTCACATAGTTAGCTTGCTGATGCAGGACAAGCTGACAGAAGCTGGAAAGCCAGGTGGCAGAGTTGAGGGTTGGGCCAACTCAGAGAACTGTCAAGTCATTATATTATTCACGATATATATTGATTGTCTTCACATAAAGAAGTCCGTTAAGTCCAGGATGCTGATAGAGGACACTATAGAGGTTGAAAATACCGAGGGAAAAAAAGCAGAAGTTACCTTTGATGAAGAAAAGGTGGCTAAAATGAAGGAGCTATCAAAAGAACCAGATATATATGAAAGACTGACAAATGGCAATGCTTTGACGTTGGCATCCGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTCATTGGTGATCCTGGGACAAGCAAGTCCCAACTACTACAGTACATACACAAATTATCTCCACGTGGCATTCACACAAGTGGAAGGAGGAGTTCTGCTGTTGGATTGACGGCTTGTGTGACCAAATATCCTGAAACAGGCGAAACTGTTATGCAACAACAAACAGTTAAAAGTATGAGGCAGGCAAGTGGTGCTCGTATTGAGGTTGATGATTCCAAGGCTAATCATGATGAGTGTTTAATCATTATAACCACAACTGAGGTTGCATTATTGGTAAAAGTGGGTTCAATCATAAATGAAATTCGGAAGAGAACTAAGGCAGATATTCGAATCTCTAAAGGCGATAAGCCAAAATGTGCTGATGTTAATGATGAACTCGTTGAGGTGGGTGGCGCTATTGATTGTGTGAGAGATGCACTATTCCAGATCATCTTGAGACTTAGAGATGATGTATTGTGA 915 0.4175 MNDHFPDTTPEELIAFSDKHIVRLPETPDEIPGGGMLHIVSLLMQDKLTEAGKPGGRVEGWANSENCQVIILFTIYIDCLHIKKSVKSRMLIEDTIEVENTEGKKAEVTFDEEKVAKMKELSKEPDIYERLTNGNALTLASGASFRGDINILLIGDPGTSKSQLLQYIHKLSPRGIHTSGRRSSAVGLTACVTKYPETGETVMQQQTVKSMRQASGARIEVDDSKANHDECLIIITTTEVALLVKVGSIINEIRKRTKADIRISKGDKPKCADVNDELVEVGGAIDCVRDALFQIILRLRDDVL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1699 304 Gene3D - 105 210 IPR027417 -
Lja1g1699 304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 264 IPR027417 -
Lja1g1699 304 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 247 301 IPR036612 GO:0003723
Lja1g1699 304 Pfam MCM P-loop domain 133 204 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1699 304 Gene3D K Homology domain, type 1 240 302 IPR036612 GO:0003723
Lja1g1699 304 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 15 205 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g1699 304 PRINTS Mini-chromosome maintenance (MCM) protein family signature 216 230 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1699 304 PRINTS Mini-chromosome maintenance (MCM) protein family signature 146 161 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1699 304 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 15 205 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g1699 304 SMART mcm 1 293 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g1699 304 Pfam KH domain 247 295 IPR004088 GO:0003723
Lja1g1699 304 ProSiteProfiles MCM family domain profile. 131 204 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1699 Lja-Chr1 18723168 18729482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1699 16 204 Core DNA Replication Machinery Family AT2G16440 57.466 3.43e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1699 K02212 - gmx:100782586 240.35