Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1698 ATGGCAAGCAGATACTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGAGTTATGGAACCAGTTGCAGCAAAATGTCTCTAAGCATTCCTTCGATACCCCTCTTTACAGATTCAACATCCCTAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGATGATCTCGCCAAGTCCAACAATTTCGTGGAGGGAGTATCACACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGCTGTAGAAACCACTGCCCTCACCGTCGATGGCGTGCCTGTTGATTCCTACCTAACTAGGTTTGTTTGGGATGAAGGCAAGTACCCCACCATGTCTCCTTTGAAGGAGATTGTTGATGGTATTCATGGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTCCGTGTTTCTGAGTACAATAATATCCGCAGTCAGCTTAATGCTATCAATAGGAAGCAAACTGGAAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCCGAGGACATTATCACCTCAGAACATTTAACTACCCTTCTTGCAATTGTTTCCAAGTATTCGCAGAAGGATTGGCTCGCAAGCTATGAAACGTTGACAGACTATGTGGTCCCCAGGTCTTCTAAGAAGCTGTATGAGGATAACGAATATGCTCTTTATACTGTGACGCTCTTCAGTCGTGTTGCGGACAATTTTAGAAACAGTGCTCGGGAAAAAGGGATCCAAGTTCGTGATTTTGAATACAGTCCAGAAACACATGAGAATCGAAAGCAGGAGATAGATAAGTTGGTGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTACACCAGTTATGGAGAGGTATTCACCTCCTGGATGCACTTTTGTGCTGTACGTTTATTTGCTGAGAGCATTTTGAGATATGGTCTGCCACCGTCGTTCTTGGCATGCGTTTTAGCTCCAACTGTAAAAGCCGAGAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCAGAAACAGTGCATACTGGAAGGCCGAGGAAGAAGTGGGTGGAATGGCTGGCTTAGGAGGTGATCCTGATACGCACCCTTATGTTTCCTTCACTATCAATCTTCTCTGA 1128 0.4574 MASRYWVVSLPVHNSASELWNQLQQNVSKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVSHKIRRQIEELERVSAVETTALTVDGVPVDSYLTRFVWDEGKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLASYETLTDYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRNSAREKGIQVRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESILRYGLPPSFLACVLAPTVKAEKKVRSILEGLSDSRNSAYWKAEEEVGGMAGLGGDPDTHPYVSFTINLL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1698 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lja1g1698 375 Gene3D - 41 312 - -
Lja1g1698 375 SUPERFAMILY Vacuolar ATP synthase subunit C 2 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Lja1g1698 375 Gene3D Vacuolar atp synthase subunit c; domain 1 7 334 - -
Lja1g1698 375 Gene3D - 163 251 - -
Lja1g1698 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 - -
Lja1g1698 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Lja1g1698 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 1 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1698 1 374 Primary Pumps ATPases(2) AT1G12840 83.155 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1698 K02148 - gmx:100813963 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1698 1 18710973 18715766 Lja1g1698 1 18710973 18715766 ECH