Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1697 ATGGCTTTTCCTGATTCCTCTTCTCGCCGCAACAACAACCTCATCCCTTCCTTCCTCTATGGCTCCTCCTCCCCCAAAACCCTACCTCTCAACCAGATCCTCTCCTCCTCCTCCACCGCCGCTGCTGCTCCCTCGAAGCTCATGATCCCGGCTCCTAATGAGAAGATCGAGATGTACTCCCCTGCTTTCTACGCCGCCTGCACCGTCGGCGGTATCCTCAGTTGTGGACTCACTCACATGACCGTCACTCCTCTTGACCTTGTCAAGTGTAACATGCAGATTGACCCTACCAAGTACAAGAGCATTTCGTCTGGGTTTGGAGTTTTGCTCAAGGAGCAGGGAGTCAAGGGCTTTTTCCGCGGCTGGGTTCCTACCTTGCTCGGTTACAGTGCACAGGGTGCTTGCAAGTTTGGATTCTATGAGTTCTTCAAGAAGTACTACTCTGATATTGCTGGCCCTGAGTATGCTACCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCTGATGTTGCACTTTGCCCCTTTGAGGCTGTGAAGGTCCGCGTCCAAACTCAGCCTGGTTTCGCAAGAGGTCTGTCTGATGGGCTGCCAAAGTTTGTCAAGGCTGAAGGAACCTTGGGGTTGTACAAGGGATTGGTGCCTTTGTGGGGACGACAGATTCCATACACAATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATCTATAAGCATGCCGTTCCCGTTCCAAAGAGCGAGTGCAGCAAAAATCTGCAACTCGGTATCAGTTTCGCTGGTGGATATGTTGCTGGTGTATTTTGTGCAATTGTGTCTCATCCTGCTGATAATCTTGTCTCTTTTCTCAACAATGCTCAAGGCGCAACAGTTGGTGATGCGGTGAAGAAGCTCGGCATGTGGGGTCTCTTTACCCGTGGTCTTCCTCTCCGTATTGTCATGATCGGAACACTTACTGGAGCCCAATGGGGAATCTACGATGCATTCAAAGTCTTTGTGGGGCTACCAACTACTGGTGGTGCTGCTCCTGCTGCTCCTGCAAAGGCATAG 1071 0.5061 MAFPDSSSRRNNNLIPSFLYGSSSPKTLPLNQILSSSSTAAAAPSKLMIPAPNEKIEMYSPAFYAACTVGGILSCGLTHMTVTPLDLVKCNMQIDPTKYKSISSGFGVLLKEQGVKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDIAGPEYATKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLSDGLPKFVKAEGTLGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKHAVPVPKSECSKNLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAQGATVGDAVKKLGMWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGLPTTGGAAPAAPAKA* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1697 356 Pfam Mitochondrial carrier protein 162 247 IPR018108 -
Lja1g1697 356 Pfam Mitochondrial carrier protein 65 148 IPR018108 -
Lja1g1697 356 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 7 353 IPR044677 GO:0005315|GO:1990547
Lja1g1697 356 SUPERFAMILY Mitochondrial carrier 64 335 IPR023395 -
Lja1g1697 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 260 339 IPR018108 -
Lja1g1697 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 62 146 IPR018108 -
Lja1g1697 356 PANTHER MITOCHONDRIAL PHOSPHATE TRANSPORTER 7 353 - -
Lja1g1697 356 ProSiteProfiles Solute carrier (Solcar) repeat profile. 159 243 IPR018108 -
Lja1g1697 356 Gene3D Mitochondrial carrier domain 63 340 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1697 Lja-Chr1 18699359 18703042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1697 11 351 Chloroplast and Mitochondria Gene Families AT5G14040 80.609 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1697 K15102 - gmx:548006 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1697 1 18699359 18703042 Lja1g1697 1 18699359 18703042 ECH
Lja1g1697 1 18699359 18703042 Lja2g2928 2 49831338 49834466 PCT