Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1691 ATGGAGGGTTTCACGCTTCCCCTACCACCAAGACCTCACACCACCACCCTTCAATGGATGGAACAACAACAGCAACAGCAACAACAACAACAACAACAACTGGTAGAAGCTAAGCATCACAACGAAGACGACATTGCCATTGCCATTGCCATGGCTGGTGGTACCCCTCTTCATTTCTTCAAACCCATGCCAGAATCTGAACCTGACTACTACAACATCAGCTCAGCAATTGCAAACACTAATGGTGTTAACATAAACAACCCCTTTGCTTCAATTTCCAACCCAGCTACCACTGATAGCTTCGTCATGCACCAGACCCTGAACATGGACTCTTTCAATCTTGACCCGTCAAATTCACAAGGTTTTTTCAATAGCAACAGTTTTGAAACTGGATTTGACAGTGGATTCTTCATGGGTGGGAGCAGCAACGCTTCAAACTCCCCTGCTCTGATGGGATTCTCTCAGGGTAATCAGATGGGTACCCTCGATCTGAGTTCGTGCTCTGAGTTTCCTCCTCCGGGTCTTGAACTTGAAGGGTTTGGTGCTCCGAGGGCTCTTGAGGCGGCGCAGCAGCCGACGCTGTTTCAGAAGCGGAGAGGGTCGGTGGAGATTTCGAGGTTGGAGACGGTGAGGAAGAAGGGGAGGAAGTGGGAAGATGGGGATGTTGAGGCTGATTTTGATGATTCTGGATTGAATTATGAGTCTGATGAGAATGGGAATGATTTGAACTCAAATGCCACCACTGTCTCTGGTGGAGACCACAAGGGGAAGAAGAAGGGTCTCCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTGCCAAAAATTAGCAAGATGGATCGGGCTTCAATACTTGGGGATGCAATTGATTACTTGAAGGAGCTACTGCAGCGGATTAATGATCTTCATAACGAACTGGAGTCAACTCCACCTGGCTCAGCGCTGCCGCCTTCTTCAAGCTTTCACCCTCTGACACCCACTCCTCAAACTCTTCCCTGCCGAGTCAAGGAGGAACTATATCCTGGTGCCTTGCCAAGCCCTAAAAACCAGCCTGTGAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCTGTCAACATTCATATGTTTTGTACCCGCAGACCAGGTCTTTTGCTTTCTACTATGAAGGCGTTGGACAACCTCGGATTGGATGTTCAGCAGGCTGTTATTAGCTGCTTTAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCACAGAAGGCCAGGATGTCCTCCCTGAGCAAATCAAAGCAGTGCTTCTTGATTCAGCTGGCTACCCGGGTATGGTGTGA 1356 0.4867 MEGFTLPLPPRPHTTTLQWMEQQQQQQQQQQQQLVEAKHHNEDDIAIAIAMAGGTPLHFFKPMPESEPDYYNISSAIANTNGVNINNPFASISNPATTDSFVMHQTLNMDSFNLDPSNSQGFFNSNSFETGFDSGFFMGGSSNASNSPALMGFSQGNQMGTLDLSSCSEFPPPGLELEGFGAPRALEAAQQPTLFQKRRGSVEISRLETVRKKGRKWEDGDVEADFDDSGLNYESDENGNDLNSNATTVSGGDHKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSALPPSSSFHPLTPTPQTLPCRVKEELYPGALPSPKNQPVKVEVRVREGRAVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFRAEQCTEGQDVLPEQIKAVLLDSAGYPGMV* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1691 451 Pfam Helix-loop-helix DNA-binding domain 267 309 IPR011598 GO:0046983
Lja1g1691 451 CDD bHLH_AtAMS_like 263 334 - -
Lja1g1691 451 Coils Coil 303 323 - -
Lja1g1691 451 Coils Coil 20 40 - -
Lja1g1691 451 SMART finulus 266 315 IPR011598 GO:0046983
Lja1g1691 451 MobiDBLite consensus disorder prediction 235 251 - -
Lja1g1691 451 MobiDBLite consensus disorder prediction 227 260 - -
Lja1g1691 451 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 451 - -
Lja1g1691 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 330 IPR036638 GO:0046983
Lja1g1691 451 Gene3D - 254 323 IPR036638 GO:0046983
Lja1g1691 451 CDD ACT_UUR-ACR-like 380 421 - -
Lja1g1691 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
Lja1g1691 451 PANTHER BHLH TRANSCRIPTIONAL FACTOR 79 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1691 Lja-Chr1 18640622 18644035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1691 111 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 57.979 3.70e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1691 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1691 - - mtr:MTR_7g083900 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1691 1 18640622 18644035 Lja1g1691 1 18640622 18644035 ECH
Lja1g1691 1 18640622 18644035 Lja2g2930 2 49878963 49882071 PCT