Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1684 ATGTCCATCTTGCCTTCACAAGCCCAAGCATCATCATCATCATCATCTTCTTCATCTGTGCAATCACCAAACCCTAATCCCCAATATGGAATTCCAATCAACCCTTCTCCTCCTCAACCTTCCTCTTCCCTTTCCCCTCCCCTCAACATCGCTATTGGATCCCTCCAGATCTCCGATAACCCAGGTTCATCAACTCCTGCTGCAGAAGATTCTGGTGGACCTTCCGAAAAGGTGACAGAATTAGGGTCTCCGAATGGTATGAAGGCTTCACCTCCACAAAACTCTAGAACTCATTCTAGGAGTTACTCTGGAAGAAGGACAGTTGGATCGTCCCCATCGATAGGGAGAACAGGAAATAGAAATCAACAGGCACCTGGGTCTGTAAATTCTCATGGAAGCACCTCTTCAGCAGGGAGGAAATCTCAGATGGTGAATGGAAATTACTTGCTCAATTTTCAGTATGATCCAATATCCCGTTCTCAACCAAGAGGTCTTCCTCCTCCCCCTCTGTCAAGAAGGCAGAAGAGAAAACCATACAACAAAGATTTGTTTTTGCAAGCAAATTACAAATTCATAGTGCTAGACTCAGGAAATTACTCACCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTGTATGTGTGACATTTTTTACCCCCTTTCCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGCCCTCAAATAACCTCATGTGGGCATATTTTCTGTTTTCCGTGTATTCTACAATACTTATTCTTGGGTGAGGAGGATCATAAAAGTGATTGCTGTAAAAGGTGTCCTTTATGCTTTATGATGATATCTGCCAAGGATTTATATACAGTCCACATCACCAATGTTAAACAGCATCAAGTAGGAGAAAATGTTGACTTCACTTTCTTAACACGGAAAAAGGATTCCTTTACCCTGTCGCATAAAAATAAACAAGAGATTGATATCACATCATGTGACAATGGATATTTATGTGATCCCTTTTCTAAGTTCACACTCACATCAGATGTTGATCTCTCAGTGAGACATGCAATATCAGATCTAGATGGCTGGCTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTCGAGAAGCTTCCATATGTTTGTGCGGCAATGCAACAATTAGAACAGAGAAAGAAGTATTGGAATGAGCTTAGGGCTTTTGACAGTGAAAAATCTTCAAAGCTTATTGATTATGGACATCAGATACCATCAATAGCTGCTGATGCTATGGATACTGATGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCGACAGATTCCCGTGACCTAAATAAGTCAATTGCTGGAGCCTGTCAGGATCAAACCTTGGATGTGGAGAAAGTGTCAATGGAGCAGGAAATGAAGTTGTCTTCTTCGTTCGAAGAGAAAAGTGGTATTCAAATGGATTCAAATGGCATTGGAGATGCAAAGGAAAATGATTCGTACAATTTCTATCAGGCTGCTGATGGTCAGCATCTGATTCTTCATCCTCTGAACATGAAGTGTCTACTAAACCATTATGGGAGCTATGATACGCTTCCTCACAGAATAAGTGGAAGGATTCTGCAATTGGAGACAGTTACGCAGTCTGAGGCCATGAGGAGGCGTTATCGATTCCTGAGTCATTTTCCATTAACCACAACATTTCAGCTTTCTGAAATTGATTTGAGTGAGATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAAAAGCGCTCTAATCAGAGGAAACAACTTGCAAAGAAGGAACAAAGGGACAAAATGAAAGCTGAAGCTTCTGCTACTTATCCTTTTCCTGTACCGAGTTATCAGCTTACTTCTCGTGATGATCCTCCGTTCTCCATGGATGACTTTGAAGCTCTGGGGAATTCAGCCATGTCATCAAGTCCCCCATTGGTTGGGGAGAGAAGATTGTTCTCGAGCGTTACTAGGCTTGGTTTTGCTGCTGGTCATGATTCTCCATCATTACAAATACAAGAAGAAACTAGCGGTCCATATAATAACAATAAGAGCACTGATTCTTCTGGTACAGCAGGTTCGAGAAATGGGGAGACACCATCATACTCTAATGTTATATCTAGAGCAGAATCTAATAACAGCTTGAATGCACCAAAGACAAATGATGTGGGGAAGAAGGGAAAGAAACCCAATCGAGTTCTTCTGTCAACAGCTGGTGTCAGGCGTTATTGA 2232 0.4189 MSILPSQAQASSSSSSSSSVQSPNPNPQYGIPINPSPPQPSSSLSPPLNIAIGSLQISDNPGSSTPAAEDSGGPSEKVTELGSPNGMKASPPQNSRTHSRSYSGRRTVGSSPSIGRTGNRNQQAPGSVNSHGSTSSAGRKSQMVNGNYLLNFQYDPISRSQPRGLPPPPLSRRQKRKPYNKDLFLQANYKFIVLDSGNYSPESMDPDKMLQWEDIVCVTFFTPFPVQCPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVHITNVKQHQVGENVDFTFLTRKKDSFTLSHKNKQEIDITSCDNGYLCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKKYWNELRAFDSEKSSKLIDYGHQIPSIAADAMDTDDENCSNGSRTSSTDSRDLNKSIAGACQDQTLDVEKVSMEQEMKLSSSFEEKSGIQMDSNGIGDAKENDSYNFYQAADGQHLILHPLNMKCLLNHYGSYDTLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLSEIDLSEILPPEALAPFMDEIKKRSNQRKQLAKKEQRDKMKAEASATYPFPVPSYQLTSRDDPPFSMDDFEALGNSAMSSSPPLVGERRLFSSVTRLGFAAGHDSPSLQIQEETSGPYNNNKSTDSSGTAGSRNGETPSYSNVISRAESNNSLNAPKTNDVGKKGKKPNRVLLSTAGVRRY* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1684 743 MobiDBLite consensus disorder prediction 28 44 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 156 177 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 86 140 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 588 646 - -
Lja1g1684 743 CDD RING-HC_RNF10 228 275 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 669 720 - -
Lja1g1684 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 323 IPR013083 -
Lja1g1684 743 MobiDBLite consensus disorder prediction 588 604 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 424 442 - -
Lja1g1684 743 SMART ring_2 228 274 IPR001841 -
Lja1g1684 743 SUPERFAMILY RING/U-box 227 281 - -
Lja1g1684 743 ProSitePatterns Zinc finger RING-type signature. 243 252 IPR017907 -
Lja1g1684 743 MobiDBLite consensus disorder prediction 419 442 - -
Lja1g1684 743 ProSiteProfiles Zinc finger RING-type profile. 228 274 IPR001841 -
Lja1g1684 743 Pfam Zinc finger, C3HC4 type (RING finger) 228 274 IPR018957 GO:0046872
Lja1g1684 743 MobiDBLite consensus disorder prediction 45 70 - -
Lja1g1684 743 PANTHER RING FINGER 10 FAMILY MEMBER 92 739 IPR039739 -
Lja1g1684 743 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 1 140 - -
Lja1g1684 743 MobiDBLite consensus disorder prediction 664 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1684 Lja-Chr1 18572284 18579349 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1684 62 670 C3H Transcription Factor Family AT3G26730 52.582 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1684 - - gmx:100798764 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1684 1 18572284 18579349 Lja1g1684 1 18572284 18579349 ECH