Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1680 ATGGTTGTGCCACCGTTGGACTGTGTTAACGGTTCGATTCCGCCGATTGCGAACGGTGGTGGCGGAGTCGTTGATGTTCAGCACCATTTGATGGTTCCGACGAGCTCCGACCTCAAAAGCGAGTTGAAGCAGAGCAAGGCTAAGGTGAACTCGAGAGGATCGAAGGAGTCGCCAATGCAGCGGAGAGTGAGTTCTCGGATCCAAGCTCTGCAGGTAGCAGCGGCTGCGGCTGAGGAGGAGCTTCAGGTTCGCCGCAAAGCAGAGGGGGAAGAGGGGAAATGCGACGAGGAGGCCGCTGTGGCTTCGTCGCCAGCTGCGAAGGGGAACAAGCGATGTCGAGTCAGCCGCGGCGGTGAGGGGAGTGTGGGTGGGAGTGAGAGAGAGGTTGTTTCGGAGCAGAGGAAGAGGAAGAGGAAGCGGCTTATGTTGATGAAGCGTCGTGAGGGTGAGGGTGCGGAGAGAACGGTGGATTTGGGGAATGTGGTTGGGGTAGAGGCTGACAAGGGCTGTTCCATCAAGGTGAAGGAGACGATTAGGTCGTTTAACAAGCACTACCTTCATTTTGTTCAGGAAGAGGAGAAGAGGTGTGGGAAAGCGGAAGCTGAGCGGAAAGCTGCTAAAAAAGGTTCAAAATCCAAGAAAGGTGCTCCCCCTGAAGATTCAAAGTCCTCTGCCAAGCGACCTGATCTGAAAGCCATATCCAAGATGATGGAAAATGATGAAATATTGTACTCTGAGAAAAGAATCGGCAACATTCCAGGTGTTGAGGTTGGATATCAGTTCTATTCTCGTGCTGAAATGGTTGCAATTGGTTTTCATAGCCACTGGTTAAATGGCATTGATTATATGGGCCAATCCTATGCTAAAGTGCACAGCAGCTATGAATTCCCAATTGCTGTGTCCATTGTTTTGTCGGGCATGTATGAGGATGATCTGGACAATGCAGAAGATGTTGTGTACACTGGTCAAGGTGGGCATAATCTGACGGGTGATAAGCGTCAAATTCGGGACCAGACGTTAGAGCGGGGTAATCTGGCACTAAAGAATTGTGTTGAGCAAAGGGTGCCTGTTAGGATGACTCGTGGTCATGAATCTTCGAGCAGTTATTCTGGTAAAGTCTACACATATGATGGCTTATACAAGGTTGTCAATTATTGGGCAGAGAAGGGAATATCTGGATTTACAGTCTATAAGTTTCGGCTTAGGAGGCTTGAGGGACAGTCTGTATTAACAACAAATCAGGTTTATTTTACATGTGGGCGTGTGCCTCAATCTGTTGCAGAGATAAGAGGGTTGGTATGTGATGATATAACTGGAGGTCAGGAAGATATGCCCATTCCTGCTACGAATTTGGTTGATGATCCCCCTGTTCCACCTACAGGTTTCACATATCTCAAGTCTCTTAAGGTTGCAAAAAATGTAAAGCTTCCCATGAATGCGGCTGGATGTAAATGCAAAGGCTTATGTATTGATCCAACAACATGTGAATGTGCATTGCGTAACGGCTCTGATTTTCCCTATGTGTCCCGGGATGGCGGAAGGTTAGTGGAAGCCAAAGACGTTGTGTTTGAATGTGGTCCCAATTGTGGTTGCGGTCCTGGTTGTGTGAACAGGACTTCTCAAAGAGGACTTAGATATCGTCTTGAGGTTTTCCGTACTGCTAAGAAAGGTTGGGCTGTTAGGTCCTGGGATTTCATACCTTCTGGAGCACCCGTTTGTGAGTACACTGGAGTACTTGCTAGGACGGATGATATGGACAGTGTGCTGGAAAACAACTATATTTTTGAGATAGATTGCTTGCAGACAATTGAAGGGCTTGGTCGAAGAGAGAGGCGGTCCCAAAATGCAGCAGTTCCTGCAAATCTTGTAGAAAAGTCTGATGAGCAAGGCTCTGAAAGTGCGCCAGAGTTTTGTATTGATGCAGGCTCAACTGGAAATATTGCTCGGTTTATTAACCATTGCTGTGAGCCTAACCTGTTTGTTCAATGTGTTTTGAGCACACACAATGATTTAAAATTGGCTAGAGTGATGCTGTTTGCTGCCGACAACATAGCCCCTTTGCAGGAACTGACATATGACTATGGCTATGAGCTTGATAGCGTCTTGGGTCCCGACGGCAAGATAATGCAGTTGCCATGCTATTGTGGAGCCTCAGGCTGTAGGAAGAGATTGTTTTAA 2178 0.4761 MVVPPLDCVNGSIPPIANGGGGVVDVQHHLMVPTSSDLKSELKQSKAKVNSRGSKESPMQRRVSSRIQALQVAAAAAEEELQVRRKAEGEEGKCDEEAAVASSPAAKGNKRCRVSRGGEGSVGGSEREVVSEQRKRKRKRLMLMKRREGEGAERTVDLGNVVGVEADKGCSIKVKETIRSFNKHYLHFVQEEEKRCGKAEAERKAAKKGSKSKKGAPPEDSKSSAKRPDLKAISKMMENDEILYSEKRIGNIPGVEVGYQFYSRAEMVAIGFHSHWLNGIDYMGQSYAKVHSSYEFPIAVSIVLSGMYEDDLDNAEDVVYTGQGGHNLTGDKRQIRDQTLERGNLALKNCVEQRVPVRMTRGHESSSSYSGKVYTYDGLYKVVNYWAEKGISGFTVYKFRLRRLEGQSVLTTNQVYFTCGRVPQSVAEIRGLVCDDITGGQEDMPIPATNLVDDPPVPPTGFTYLKSLKVAKNVKLPMNAAGCKCKGLCIDPTTCECALRNGSDFPYVSRDGGRLVEAKDVVFECGPNCGCGPGCVNRTSQRGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVCEYTGVLARTDDMDSVLENNYIFEIDCLQTIEGLGRRERRSQNAAVPANLVEKSDEQGSESAPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHNDLKLARVMLFAADNIAPLQELTYDYGYELDSVLGPDGKIMQLPCYCGASGCRKRLF* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1680 725 SMART G9a_1 245 407 IPR003105 -
Lja1g1680 725 ProSiteProfiles SET domain profile. 546 695 IPR001214 GO:0005515
Lja1g1680 725 Coils Coil 60 87 - -
Lja1g1680 725 ProSiteProfiles Pre-SET domain profile. 481 543 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1680 725 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 60 724 - -
Lja1g1680 725 ProSiteProfiles YDG domain profile. 250 403 IPR003105 -
Lja1g1680 725 Pfam Pre-SET motif 438 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1680 725 MobiDBLite consensus disorder prediction 35 63 - -
Lja1g1680 725 Gene3D - 233 419 IPR036987 -
Lja1g1680 725 SMART set_7 546 701 IPR001214 GO:0005515
Lja1g1680 725 Gene3D SET domain 427 725 IPR046341 -
Lja1g1680 725 Pfam SET domain 557 695 IPR001214 GO:0005515
Lja1g1680 725 SMART preset_2 434 530 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1680 725 MobiDBLite consensus disorder prediction 199 231 - -
Lja1g1680 725 SUPERFAMILY SET domain 431 701 IPR046341 -
Lja1g1680 725 SUPERFAMILY PUA domain-like 232 422 IPR015947 -
Lja1g1680 725 Pfam SAD/SRA domain 249 407 IPR003105 -
Lja1g1680 725 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 60 724 - -
Lja1g1680 725 ProSiteProfiles Post-SET domain profile. 709 725 IPR003616 -
Lja1g1680 725 MobiDBLite consensus disorder prediction 109 134 - -
Lja1g1680 725 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 725 IPR025794 GO:0016571
Lja1g1680 725 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1680 Lja-Chr1 18529799 18537285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1680 236 725 EF-hand Containing Proteins AT5G13960 67.073 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g1680 SAD_SRA 9e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1680 K11420 - gmx:100795584 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1680 1 18529799 18537285 Lja1g1680 1 18529799 18537285 ECH