Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1677 ATGAATCAAATCAATAGTAGTAATAGTCATGGGGGATTAAGCACTTCTAGCTTGATTGAGATGCAAGACGACCCATCCCAGAAGCCCTTACAAAAAGGTAACACTAATGAGAGAAAAAGACACTATAGAGGCGTTAGACAGAGACCATGGGGCAAATGGGCAGCCGAAATCCGTGACCCTAAAAAAGCAGCTAGAGTGTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCTGCAGCGTACGATGCTGCTGCCTTGAAATTCAAAGGGACCAAAGCCAAACTCAACTTTCCAGAACGCGTTAATAATAATAACAACAACCACCACCATGTTGCTTCTTCAGCTTCTACACCACCACTACCACTAGTTTATCAACATACACCTCCATTGTTACCACCATCAGAAGGAGAAGAAGGTGGAGAAGGATTCCCGAATCTAATGCAATACGCTCAGCTTCTATGGAGTAGGGGTGATGATGATGTACAACATGCTGCTTCATCGTTGTTCTCAACATCATCGGCAATGCCAACTCCTACAAATCATGATCAGCAACAGCATGTTGGAGATAGAAATCTTAACCCGGGTGCTCATCAACAGGGAGATTATGATCATTGTGGTTCTAGTGGTAATTCTTCATTTTTCAAAGGGTTTCCATCATGA 660 0.4409 MNQINSSNSHGGLSTSSLIEMQDDPSQKPLQKGNTNERKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGTKAKLNFPERVNNNNNNHHHVASSASTPPLPLVYQHTPPLLPPSEGEEGGEGFPNLMQYAQLLWSRGDDDVQHAASSLFSTSSAMPTPTNHDQQQHVGDRNLNPGAHQQGDYDHCGSSGNSSFFKGFPS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1677 219 MobiDBLite consensus disorder prediction 170 219 - -
Lja1g1677 219 MobiDBLite consensus disorder prediction 170 192 - -
Lja1g1677 219 Gene3D AP2/ERF domain 40 100 IPR036955 GO:0003700|GO:0006355
Lja1g1677 219 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Lja1g1677 219 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 MobiDBLite consensus disorder prediction 1 46 - -
Lja1g1677 219 PANTHER DNA-BINDING DOMAIN 11 175 IPR044808 GO:0003700|GO:0009873
Lja1g1677 219 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 MobiDBLite consensus disorder prediction 203 219 - -
Lja1g1677 219 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1677 219 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Lja1g1677 219 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1677 Lja-Chr1 18513130 18515367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1677 23 169 AP2-EREBP Transcription Factor Family AT5G13330 50.000 3.81e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g1677 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1677 - - gsj:114398791 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1677 1 18513130 18515367 Lja1g4372 1 56506757 56508198 ECH
Lja1g1677 1 18513130 18515367 Lja4g0503 4 4110477 4111860 ECH
Lja1g1677 1 18513130 18515367 Lja1g1677 1 18513130 18515367 ECH
Lja4g0503 4 4110477 4111860 Lja1g1677 1 18513130 18515367 ECH
Lja1g1677 1 18513130 18515367 Lja2g2787 2 42633563 42635788 PCT
Lja2g2932 2 49947451 49948899 Lja1g1677 1 18513130 18515367 PCT