Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1671 ATGGCGGAAGAGAATTCGGGTGCTATGAACCCTAATTTGAGTCATGGTCAAGGTCTTGGGCCAATATCTAGGTCTGTAAACGTTGAATCACTTCAAAGAATCAACGAAGAAGTCCATGCTCCCCATGAATTGAATCATATTTTGGCCAATTCAGGTGATGGAGTCACATTGGAGGATGGGGAAGGATCTTCGGTGACTAAGACGTCACTGAAGATGGATGGTGTTAAAAAAGGCAGTGACAATGAAGAGAATTTTTTTAAGTGTATTATCTGTTTAGATTTGGCCAAGGAACCTATTGTGACTCCTTGTGGCCATTTGTTTTGTTGGCCATGCATATATCAATGGCTAGATGTGCATTCAAATTCTAAGAAGTGCCCGGTTTGCAAGAGAGATGTGATTCTCAAGAATGTTACTCCAATATATGGACGTGGAACAAATGCTCATGTGAGGGAAGATAAGGATTCCGATCTTGGAATTCCTTCTAGGCCTGAAGCAAGGCGTGTTGAGAATTTGAGGGAAGCCCTTCATTTGAATGAATTTCCACTCCTTGTGAAAGACATTCTTTTGCGTATGGGAGGAGGCAGAACTAATCTAATTCAATATTTATCTCAGCTACTTGAATCAAACAATCATGCTCGTCGTGAACTAGCTGAGATGCCCATTTCCGTATTGAGAATGTTCATGTCATCTGAAGGCATAACGAATGAACTAATTTCTAGGGCACGCCGTCGTCATGATGCAGTGAGTTTGCTGAACAACAATGATGGCAGAGGTGGTAGAAACCAAGAGCGCCCTCCCTCATCCAATGATGCTTCAAGAGTACCTGGTGTGGATGCTGAAGATCAAGCTCCAAGGGGCAGTCATTTGGACTGA 873 0.4284 MAEENSGAMNPNLSHGQGLGPISRSVNVESLQRINEEVHAPHELNHILANSGDGVTLEDGEGSSVTKTSLKMDGVKKGSDNEENFFKCIICLDLAKEPIVTPCGHLFCWPCIYQWLDVHSNSKKCPVCKRDVILKNVTPIYGRGTNAHVREDKDSDLGIPSRPEARRVENLREALHLNEFPLLVKDILLRMGGGRTNLIQYLSQLLESNNHARRELAEMPISVLRMFMSSEGITNELISRARRRHDAVSLLNNNDGRGGRNQERPPSSNDASRVPGVDAEDQAPRGSHLD* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1671 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 70 272 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja1g1671 290 CDD RING-HC_AtRMA_like 86 129 - -
Lja1g1671 290 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Lja1g1671 290 SUPERFAMILY RING/U-box 81 135 - -
Lja1g1671 290 SMART ring_2 88 128 IPR001841 -
Lja1g1671 290 MobiDBLite consensus disorder prediction 7 21 - -
Lja1g1671 290 ProSiteProfiles Zinc finger RING-type profile. 88 129 IPR001841 -
Lja1g1671 290 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g1671 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
Lja1g1671 290 MobiDBLite consensus disorder prediction 254 269 - -
Lja1g1671 290 Pfam Zinc finger, C3HC4 type (RING finger) 88 128 IPR018957 GO:0046872
Lja1g1671 290 PANTHER OS01G0830200 PROTEIN 70 272 - -
Lja1g1671 290 MobiDBLite consensus disorder prediction 249 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1671 Lja-Chr1 18460398 18461270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1671 43 236 C3H Transcription Factor Family AT3G58030 39.810 5.60e-43 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1671 K10666 - gmx:100811099 194.126