Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1669 ATGGGTCGTTTCCATTTTCTTCTTCTTCTTCTTCTGTGTTGTCTCTTTCACTTCTTCTTCTTCTTCGCTACCCATCACGCAAATGCCCTCAACGCGTCGGTTCCCAACGATGCATTGTCCCTTCTCAGCTTCAAACGCGCTGTCTCTTCCGACCCTTTGAACCATCTCTCCGGTTGGACCAACCGCTCATTTTCCAGTCTCTGCAATTGGCGCGGCGTCACGTGCGGCGGTGACGGGAGGGTGAGCGCTCTGCACGTTACTGGTCTTCGCGGCGGCGAGTTGACGCCTTCTGTTGGCGATTTGTCGGGGCTTCGTGTCCTGTCCATTCCCGGAAACATGTTTTCCGGCGAGGTTCCGACGAGCATAGGGAATCTCCGGGAACTTGAGGTTCTTGAGCTCCAGGGGAACAACTTCTCCGGGAAAATCCCCTACCAGATGAGTTTGCTTGAATCTCTTAGCCTTGTTAACCTCTCTGGTAATGCTTTCTCTGGTTATATACCCAGTGGATTGATTGGTTCTAGGAATTTGAAAATCGTTGATTTGTCGAATAATCAATTTTCTGGTCCTATTCCAGTAAAGGGTTTTAGTGGTTGTGATTCGTTGAATTATTTGAGCCTGTCTGATAACTTTTTGATTCGAGAGATTCCACCCCAGATTGGGAAATGCAGGAACTTGAGGACCCTTTTGGTTGATGGGAATATATTGGAGGGTAGGATCCCTCCTGAGATTGGAAATCTTGTTGAACTTAGAATTCTAGATGTTTCTAGAAACAGCCTCACTGGAAGGATTCCCAGGGAGCTGGGTAATTGTTTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTTTGATGACCGCGGTCCCGATGAGGGAAGCTTGGATGATAGCTTTAGAGGAGAGTTCAATGACTTTGTTGGGCATATTCCCCCTGAAGTGTTGTTGCTTTCAAGTTTGCAGGTTTTGTGGGCGCCCAGGGCGAATCTTGGTGGACGGTTGCCTCGTGGTTGGACAGATTCGTGCTCACTCCGAGTACTCAATTTGGCAGAGAATTATGTTACTGGTGTCGTGCCTGAGAGTTTGGGGATGTGTAGAAATTTGACTTTCTTGGACTTGAGTTCTAACAATTTAGTGGGATATTTGCCTTCCCTTCAGCTTCAGGTTCCTTGTATGATGTACTTCAATGTCAGCAGGAATAATATGTCTGGCATGCTTCTTGGGTTTAGGAGAGAAAGCTGTCATGTGAGTAGCACCCTTGCTGCACTAGACCCTGCAATCCTTGAGTTGGAAGGTTTTAGTGATGCATACTTTAGTATTCCTGTTTTGAGTTATCAAAAGAATGCTCTCATTGGATCAGGTTTTGAAGAGACTTTTGTTGTTAGCCATGATTTCAGTTGGAACAGTTTCTTGGGATCCTTACCTTTGTTCTCTCTTGGAGATAATATTTTTGCTGCAAATCGTAAAGTCTCCTACATGTTGTCTCTCAATAATAACAAGTTCAATGGAACTCTACACCACCAGCTAGTTTTGAACTGTAAGGACCTCAAGGCATTGTCTGTTAACTTGAGTGTGAACCAACTATCCGGTGCGAATTCCCTAGCATTTTTCCCGGGCTGTCTGCAGCTAACAGATTTTGAAGCAGCATACAACCAGATTGATGGGACTATTGGACCGGGTATAGGTGACTTAGCGATGCTTCAGTGTCTTGATTTAAGTGGGAACAAACTATCTGGAGTATTGCCGGATCAGCTGGGAAACCTAAAAAACTTGAAATGGGTGCTTCTAGGAGGAAACAATCTAACAGGCGAAGTTCCTTCCCGACTTGGTGAATTGACTTCCCTCACTGTTTTAAATCTGTCTCACAATGCTCTCACAGGAACAATTCCAGAAAGTTTGTCTAATGCCACTAGTCTTGAAGTTCTGTTGCTAGATTATAACAACCTTTATGGGGAAATACCTGTATCTTTTTCTGCTCTCTCCAAACTTGTTCAACTAGATGTCTCTTTCAACAACCTTTCAGGTCATATTCCTCATCTCCAACTCCCAAGTGATTGTGATTCCTATAAAGGGAATGAGCACCTGCACTCTTGCCCTGATCCATACTCCAACTCACCTGCTTCTCTTCCAGTCCCTCTTGAAGTCCATAATTTCCATAGACGGAGGAAATTATCGACATTGGTTATTGCTGTGGTCACTTCTGCTTCTGTGGCTCTCTGCACACTTCTGGTAATAGTAATCGTGATCACTTTTAGAAAGAGTAAACTTGGTCGGTGTAGCAGTATTAGAAAGCGAGAGGTAGTGACCTTTCAAAATGTTCCTATAGCATTGAGTTATGACAGTGTGGTCACGGCTACTCGAAATTTCAGCATCCGGTATCTTATCGGCACAGGTGGCTTTGGGTCAACTTACAAGGTAGAACTATCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGATTTCAAGGCATTCAACAGTTTGAAACGGAAATAAGGACTCTGGGGAGAATTCGACACAAGAATCTTGTGACTCTTATTGGGTATTACGTAGGAAAGGTTGAAATGTTCTTAATTTACAACTACCTTTCTGGTGGAAACCTTGAAGCTTTCATACATGACAACTCTGGGAAAAATGTATTGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCTTACCTTCATTACTCTTGTGTTCCTCGCATAGTTCACCGCGATATCAAGCCTAGCAACATTTTACTTGATGAAGACCTTAATGCCTACTTATCCGATTTTGGCTTGGCGCGGCTGCTTGAGGTATCTGAGACTCATGCCACTACAGATGTGGCAGGCACATTCGGTTATGTTGCGCCCGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTTTACAGCTTCGGTGTTGTGTTATTAGAAATGATGTCAGGAAGAAAGTCACTTGATCCATCGTTTTCTGAATTTGGAAATGGATTCAATATTGTGCCGTGGGCTGAGCTGCTGATGACAGAGGGCCGTTGTTCTGAGCTATTTTCATCTTCTTTGTGGGAATCAGGGCCGAAGGAAAAGTTGCTGGGGCTTTTAAAGCTTGCATTAACATGCACAGCAGAGACTCTTTCTATTCGGCCATCAATGAAACAGGTTCTTGAGAAATTGAAACAATTGAAAAATTGA 3189 0.4403 MGRFHFLLLLLLCCLFHFFFFFATHHANALNASVPNDALSLLSFKRAVSSDPLNHLSGWTNRSFSSLCNWRGVTCGGDGRVSALHVTGLRGGELTPSVGDLSGLRVLSIPGNMFSGEVPTSIGNLRELEVLELQGNNFSGKIPYQMSLLESLSLVNLSGNAFSGYIPSGLIGSRNLKIVDLSNNQFSGPIPVKGFSGCDSLNYLSLSDNFLIREIPPQIGKCRNLRTLLVDGNILEGRIPPEIGNLVELRILDVSRNSLTGRIPRELGNCLKLSVLVLTDLFDDRGPDEGSLDDSFRGEFNDFVGHIPPEVLLLSSLQVLWAPRANLGGRLPRGWTDSCSLRVLNLAENYVTGVVPESLGMCRNLTFLDLSSNNLVGYLPSLQLQVPCMMYFNVSRNNMSGMLLGFRRESCHVSSTLAALDPAILELEGFSDAYFSIPVLSYQKNALIGSGFEETFVVSHDFSWNSFLGSLPLFSLGDNIFAANRKVSYMLSLNNNKFNGTLHHQLVLNCKDLKALSVNLSVNQLSGANSLAFFPGCLQLTDFEAAYNQIDGTIGPGIGDLAMLQCLDLSGNKLSGVLPDQLGNLKNLKWVLLGGNNLTGEVPSRLGELTSLTVLNLSHNALTGTIPESLSNATSLEVLLLDYNNLYGEIPVSFSALSKLVQLDVSFNNLSGHIPHLQLPSDCDSYKGNEHLHSCPDPYSNSPASLPVPLEVHNFHRRRKLSTLVIAVVTSASVALCTLLVIVIVITFRKSKLGRCSSIRKREVVTFQNVPIALSYDSVVTATRNFSIRYLIGTGGFGSTYKVELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKVEMFLIYNYLSGGNLEAFIHDNSGKNVLWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLEMMSGRKSLDPSFSEFGNGFNIVPWAELLMTEGRCSELFSSSLWESGPKEKLLGLLKLALTCTAETLSIRPSMKQVLEKLKQLKN* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1669 1062 SMART LRR_typ_2 609 633 IPR003591 -
Lja1g1669 1062 SMART LRR_typ_2 198 222 IPR003591 -
Lja1g1669 1062 SMART LRR_typ_2 246 270 IPR003591 -
Lja1g1669 1062 SMART LRR_typ_2 657 681 IPR003591 -
Lja1g1669 1062 SMART LRR_typ_2 149 173 IPR003591 -
Lja1g1669 1062 SMART LRR_typ_2 561 584 IPR003591 -
Lja1g1669 1062 Coils Coil 1050 1062 - -
Lja1g1669 1062 SUPERFAMILY L domain-like 302 680 - -
Lja1g1669 1062 Pfam Leucine Rich Repeat 249 270 IPR001611 GO:0005515
Lja1g1669 1062 PRINTS Leucine-rich repeat signature 609 622 - -
Lja1g1669 1062 PRINTS Leucine-rich repeat signature 564 577 - -
Lja1g1669 1062 Gene3D Ribonuclease Inhibitor 428 715 IPR032675 -
Lja1g1669 1062 CDD STKc_IRAK 792 1060 - -
Lja1g1669 1062 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Lja1g1669 1062 Gene3D Ribonuclease Inhibitor 195 288 IPR032675 -
Lja1g1669 1062 Gene3D Ribonuclease Inhibitor 36 194 IPR032675 -
Lja1g1669 1062 SUPERFAMILY RNI-like 87 401 - -
Lja1g1669 1062 Gene3D Transferase(Phosphotransferase) domain 1 862 1062 - -
Lja1g1669 1062 SUPERFAMILY Protein kinase-like (PK-like) 764 1057 IPR011009 -
Lja1g1669 1062 Gene3D Phosphorylase Kinase; domain 1 748 861 - -
Lja1g1669 1062 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Lja1g1669 1062 Pfam Protein kinase domain 791 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1669 1062 Pfam Leucine rich repeat 611 670 IPR001611 GO:0005515
Lja1g1669 1062 Pfam Leucine rich repeat 174 233 IPR001611 GO:0005515
Lja1g1669 1062 Gene3D Ribonuclease Inhibitor 289 414 IPR032675 -
Lja1g1669 1062 ProSiteProfiles Protein kinase domain profile. 786 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1669 1062 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 1062 - -
Lja1g1669 1062 ProSitePatterns Protein kinases ATP-binding region signature. 792 814 IPR017441 GO:0005524
Lja1g1669 1062 SMART serkin_6 786 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1669 1062 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 16 1062 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1669 Lja-Chr1 18432727 18437500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1669 9 1061 Receptor kinase-like Gene Family AT3G02130 42.832 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Lja1g1669 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1669 - - gmx:100795047 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1669 1 18432727 18437500 Lja1g1669 1 18432727 18437500 ECH