Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1666 ATGTCAAGTTCTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGGAGCCGTGGCATTGGTAGGGATATCTATAATACTTTTATGGTTTTGTTTGTGTCGCCAGAGGAGTGTTTCTAGGACTTCGGAGACAGGTTCCTCTGATCCTTCCCAAGTGGGAAGACATGGTGCAATTGAGTTGCAGATACGAGATACTAGGCGTTTTGCGATGGAAGAACTTTCTCTGGCAACAAAAAATTTCAATGACAGAAATTTGATTGGACAAGGGAAATTTGGGGAAGTTTATAATGGTTTACTTCAAGATGGGGTGCTTGTAGCCATCAAAAAACGCTTTGGAACCCCGAGTCAGGAATTTGTTGATGAGGTACGCTATCTCTCGTCTATTCAACATCGGAATATCGTAACTCTTATAGGCTACTGCCAGGAAAACAATCTGCAGTTTCTCATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCGCTGGTCAACAATCTCAAGAGAAGCTAGAATTCAAGCTTAGGCTTTCAATAGCTCAAGGTGCAGCAAAAGGTTTAGCTCATATCCACTCTCTGAGTCCCCGTTTGGTGCACAAGGATTTCAAAACAGCTAATGTTCTTGTAGATGAAAACTTCATTGCTAAGGTTGCAGATGCTGGGCTAAAACATTTTTTGGGGAGAGTTGACATTGCAGGATCATCTTCTCAAGTGGCAGCAGATGAGATATTCCTTGCACCTGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGATGTATACAGCTATGGCGTATTTTTGCTTGAATTGTTGAGTGGGAAGGAAGCAACAGAATCACCCTCTCCGGACTCCAATCTAAATCTGGTTGAATGGGTTCTAAGAAATCAAGACCGCCACCTTATGTCCAAAATCATTGATAGGAGATTGGAGAGTAGTTTCACAGCTGAAGGCATGGAAGCTTACATCCTGCTTGTAATCAGATGCTTGGATCTTTCGAGCGAAAGACGACCCGCCATGAGCTATGTGGAAACGGAACTTGATAGAATCTTGGAGAAAGAAATGAACTTGACAACAATCATGGGTGAAGGAACCCCAACTGTGACTCTTGGAAGTCAGTTATTCAAAGCAACTAAATAA 1143 0.4269 MSSSLAAILGGAAGGAVALVGISIILLWFCLCRQRSVSRTSETGSSDPSQVGRHGAIELQIRDTRRFAMEELSLATKNFNDRNLIGQGKFGEVYNGLLQDGVLVAIKKRFGTPSQEFVDEVRYLSSIQHRNIVTLIGYCQENNLQFLIYEYVPNGSVSSHLYGAGQQSQEKLEFKLRLSIAQGAAKGLAHIHSLSPRLVHKDFKTANVLVDENFIAKVADAGLKHFLGRVDIAGSSSQVAADEIFLAPEVREFRRFSEKSDVYSYGVFLLELLSGKEATESPSPDSNLNLVEWVLRNQDRHLMSKIIDRRLESSFTAEGMEAYILLVIRCLDLSSERRPAMSYVETELDRILEKEMNLTTIMGEGTPTVTLGSQLFKATK* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1666 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 380 - -
Lja1g1666 380 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 380 - -
Lja1g1666 380 ProSiteProfiles Protein kinase domain profile. 79 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1666 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lja1g1666 380 Pfam Protein tyrosine and serine/threonine kinase 83 347 IPR001245 GO:0004672|GO:0006468
Lja1g1666 380 Gene3D Transferase(Phosphotransferase) domain 1 152 365 - -
Lja1g1666 380 Gene3D Phosphorylase Kinase; domain 1 50 151 - -
Lja1g1666 380 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Lja1g1666 380 SUPERFAMILY Protein kinase-like (PK-like) 60 345 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1666 Lja-Chr1 18349627 18358982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1666 12 353 Receptor kinase-like Gene Family AT1G30570 34.973 1.34e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Lja1g1666 PK_Tyr_Ser-Thr 9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1666 - - gmx:100820178 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1666 1 18349627 18358982 Lja1g1666 1 18349627 18358982 ECH