Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1653 ATGAGCCCTCCTCATACAACCCCGTCAAAGGGAAAGAAGAAGACGGAAACAACGCCGCAACAATCACAAGAGCAGCAAACAACCTGGGGAGGAAGGTACCTCGGCGTCCGGAGGAGGCCATGGGGGCGTTACGCCGCGGAGATTCGTGACCCTTCCACAAAGGAAAGGCATTGGCTGGGCACGTTCGACACCGCGGAGGAAGCCGCGCTGGCCTATGATAGGGCAGCGCGGTCCATGCGCGGGTCACGTGCCCGCACCAATTTCGTCTACACGGACACGCCTCCCGGCTCCTCCGTGACGCCAATCCTCTCCCCAGACCAACAACAACAAGTGGTTGATCACACGTTCCACGACCTCTCCTCATTCTTGACACAAAACAACCATCCTGGTTCAGTTCAACCCGACCCTGTTCCGGCTCTCGACCCGGTTATGCTTCTCGCCGGAATGCCGTCGGCTGTTTACGGATACGGTGGTTACGGGGAGGGAACAAATTGTGTAACTGCTGCTGCCACGGTGGAGGGTAATTATAACTCTAACAACAACAACTCTAATCATTATTTTATGAACCAACAACAAGTGTTTTTCGACGACGGTTGTAACGCCGCCGCCGGCAGCACTAGCGGTGAGATAGAGCTTCCGCCGTTGCCACCGGATATTACTAGCTCATGTTATGATAGTAGTAATAATGATAATGGGTGTTATTATTGGGAGCAGAATGCGGGGGGTTATGATCAGTATTTGCATAATGTGGCGGTTTCAGAGAATGTTGTGGCGGGTTCTGAAGGTTTTCAGTTTGGAGGCTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTTCTTCTGA 840 0.5226 MSPPHTTPSKGKKKTETTPQQSQEQQTTWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYTDTPPGSSVTPILSPDQQQQVVDHTFHDLSSFLTQNNHPGSVQPDPVPALDPVMLLAGMPSAVYGYGGYGEGTNCVTAAATVEGNYNSNNNNSNHYFMNQQQVFFDDGCNAAAGSTSGEIELPPLPPDITSSCYDSSNNDNGCYYWEQNAGGYDQYLHNVAVSENVVAGSEGFQFGGSSSSSSSSSFFF* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1653 279 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Lja1g1653 279 Pfam AP2 domain 33 81 IPR001471 GO:0003700|GO:0006355
Lja1g1653 279 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lja1g1653 279 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lja1g1653 279 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lja1g1653 279 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 251 - -
Lja1g1653 279 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Lja1g1653 279 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Lja1g1653 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 10 251 - -
Lja1g1653 279 MobiDBLite consensus disorder prediction 13 30 - -
Lja1g1653 279 MobiDBLite consensus disorder prediction 1 34 - -
Lja1g1653 279 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1653 Lja-Chr1 18135694 18136533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1653 5 104 AP2-EREBP Transcription Factor Family AT5G13910 75.000 5.96e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g1653 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1653 K09286 - gmx:100792421 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1653 1 18135694 18136533 Lja1g1653 1 18135694 18136533 ECH