Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1651 ATGAGTTTCCAAGATATCCAAGGTGGGGCCAACCCTCCCACTCGCCGGACCCAATCCCCATCTCAGGCCGTTGCTGCCGGAATCTTCCAGATCAACACCGCCGTCGCCACTTTCCGGCGACTCGTCGATGCCGTTGGAACTGTCAAAGACACTCCAGAACACCGACAGAAACTGCACAATACGAGGCAGAGGATATTGCAGCTGGTGAAGGATACTTCTGCTAAGCTCAAAATCTTGACTGATTCTGATCGTGATGCTAATGCCAATGCTAATAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACCACGTTACAAGAATTTCAGAAAGTACAACAGCTTGCTTCTGAGCGTGAATCGACTTACACCCCGGCTTCCACTTCTTCTCCTTTACCAACAAGCTCTGGCGCTGGTGAAGAATCAGTTGAGGTAGACTTGGAAAGCAGACCTTTTATCGGAGAACAGAAGAGGCAAGAGATACTTCTGTTGGATAATGAATTATCCTTCAATGAGGCTATGATTGATGAAAGAGATCAGGGTATCCGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGATCTTGCTGTTCTGGTTCATGATCAGGGGACTGTTATTGATGACATTCACTCAAATATCGATGCTTCTGCCGGTGCAACATCCCAAGCTAAGGTTCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCAAAAACTAAATGGTGTTGGTGGGTGCTTGTAATATTTGTGGCAGTGCTGGTCATCTTACTTCTTGTACTCATTCTTTAG 801 0.4519 MSFQDIQGGANPPTRRTQSPSQAVAAGIFQINTAVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQLVKDTSAKLKILTDSDRDANANANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPASTSSPLPTSSGAGEESVEVDLESRPFIGEQKRQEILLLDNELSFNEAMIDERDQGIREVEEQIGQANEIFKDLAVLVHDQGTVIDDIHSNIDASAGATSQAKVQLAKASKSVKSKTKWCWWVLVIFVAVLVILLLVLIL* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1651 266 PANTHER SYNTAXIN 15 265 IPR045242 -
Lja1g1651 266 Pfam SNARE domain 209 261 IPR000727 -
Lja1g1651 266 SMART tSNARE_6 168 235 IPR000727 -
Lja1g1651 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Lja1g1651 266 CDD SNARE_Qa 176 234 - -
Lja1g1651 266 Gene3D - 167 266 - -
Lja1g1651 266 PANTHER SYNTAXIN-22-LIKE 15 265 - -
Lja1g1651 266 MobiDBLite consensus disorder prediction 114 147 - -
Lja1g1651 266 Gene3D - 11 130 - -
Lja1g1651 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Lja1g1651 266 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g1651 266 MobiDBLite consensus disorder prediction 114 138 - -
Lja1g1651 266 SMART SynN_4 8 122 IPR006011 GO:0016020
Lja1g1651 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1651 Lja-Chr1 18111059 18113547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1651 1 253 SNARE and Associated Proteins AT5G46860 58.366 6.23e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1651 - K08488 gmx:100787141 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1651 1 18111059 18113547 Lja1g1651 1 18111059 18113547 ECH