Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1639 ATGGCTGATCAAGAATCAGACAAGAACATTGAGATATGGAAGATAAAAAAATTGATCAAAGCTCTGGAAGCTGCCAGGGGTAACGGTACCAGCATGATTTCTCTGATCATGCCTCCACGTGATCAAATAGCTCGTGTCACTAAGATGTTGGGAGACGAATTTGGAACTGCTTCAAACATCAAGAGCAGGGTGAACCGGCAATCAGTGTTGGGAGCCATTACTTCTGCCCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGTTTGGTTCTTTACACTGGTACCATTGTCACTGATGATGGCAAGGAAAAGAAGGTGACAATTGATTTTGAACCTTTCAAGCCTATCAATGCTTCACTTTACCTCTGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTGGAATCTGATGACAAGTTTGGTTTTATTGTTATGGATGGAAACGGAACCCTCTTTGGGACTTTAAGCGGAAACACCCGTGAGGTGCTTCATAAGTTTACTGTTGATCTGCCAAAGAAACACGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGCATGGAAAAACGGCACAATTATGTTAGGAAGACTGCAGAACTTGCTACTCAGTTTTACATCAATCCTGCTACTAGTCAGCCTAATGTGTCTGGACTCATACTTGCTGGTTCAGCTGACTTCAAGACTGAGCTGAGCCAGTCAGACATGTTTGATCCTCGTCTGCAGGCTAAAATCTTGAATGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCTATTGAGTTATCTGCTGAGATTTTATCTAATGTGAAGTTCATACAAGAGAAGCGTTTGATAGGAAAATATTTTGAAGAGATCAGCCAAGACACTGGGAAATATGTCTTTGGGGTTGATGACACATTGAAGGCTCTGGAGATGGGTGCTGTGGAAACACTCATTGTGTGGGAAAGTTTGGATATTAACAGGTATGTTCTGAAAAATAGTACTACTGCTGAGATTGTAATAAAGCACTTGAACAAGGAACAAGAGGCTGATCAAAGCAACTTCCGGGACTCGGTCACCTCCGCAGAGCTCGAGGTTCAGGAGAAGCTGCCCTTGCTTGAGTGGTTTGCCAATGAGTACAAGCGATTTGGATGCTCTCTGGAATTTGTGACCAACAAATCTCAAGAGGGGTCACAATTTTGCAGGGGGTTTGGTGGCATTGGTGGTATCCTTCGCTACCAGCTTGACATCAGATCGTTCGATGAGTTATCAGACACTGAAGAAGTGTACGAAGATTCTGATTAA 1311 0.4302 MADQESDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQIARVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWESLDINRYVLKNSTTAEIVIKHLNKEQEADQSNFRDSVTSAELEVQEKLPLLEWFANEYKRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDTEEVYEDSD* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1639 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 2 436 - -
Lja1g1639 436 Gene3D - 278 436 IPR029064 -
Lja1g1639 436 Pfam eRF1 domain 2 143 276 IPR005141 -
Lja1g1639 436 Gene3D eRF1 domain 2 135 276 IPR042226 -
Lja1g1639 436 Pfam eRF1 domain 3 280 417 IPR005142 -
Lja1g1639 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 2 436 IPR004403 GO:0003747|GO:0006415
Lja1g1639 436 SUPERFAMILY Translational machinery components 141 275 - -
Lja1g1639 436 SUPERFAMILY L30e-like 277 419 IPR029064 -
Lja1g1639 436 Pfam eRF1 domain 1 17 137 IPR005140 -
Lja1g1639 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 11 416 IPR004403 GO:0003747|GO:0006415
Lja1g1639 436 SMART eRF1_1_2 3 139 IPR005140 -
Lja1g1639 436 Gene3D eRF1 domain 1 1 134 IPR024049 -
Lja1g1639 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 5 139 IPR024049 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1639 Lja-Chr1 17974094 17976775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1639 1 436 Eukaryotic Initiation Factors Gene Family AT3G26618 93.119 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1639 K03265 - qsu:111999806 819.69