Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1626 ATGGAAAATTTAGCTGTGCTTGTCTTAGATGGAACAGCAATACAAGAACTACCTTCATCCTTGCAGCGTTTGGTGGGGCTTGAAGAACTGAGCTTGAACAAATGCCGAAGGCTTAAGATTATTCCCTCATGGATTGGACGACTCACCAAACTCTGCAAGTTAGACCTTACCGACTGTGAATCACTTGAAACTTGTCCAAGCAGCATTTTCAAATTGAAGCTGACAGGACTTGATTTTAAGGGTTGCTCAAAGCTAAAGACCTTCCCACAGATCTTTGAGCCTGCAGAAAGTTTTGCTCACATTAGCTTAACAGAAACAGCAATTAAAAAACTGCCTTCATCGTTGGATTTTTTGGTGGGCATTCAAACCCTGTGTCTGAACGAGTGCCGTAATCTGGAGTCACTTCCAAGCAGCATTGGTAATCTAAACCTTCTCACTGAGCTTGACTTTTCATTTTGCTGTAAGTTAACAGAAATCCCAAATGACATAGGTCGCTTGATATCATTAAGTAAACTGTCACTGCAAGACACCGCAATTGTGAACCTTCCAGAGAGTATTGCTCATCTTTCAAGGTTGGAATCACTTGATGTAAGTGGTTGCAGAATGCTTGAATGTATCCCACAGCTTCCACCATTTATGAAACAGCTATTGGCATTTAATTGCCCATCCATTAGAAGATTGATGATGCCAAATCCAAGGAAAGAGGGGAGTGCAGTTCCTGATTGGTTCCCTTATCGTGGCGAGGGAAATTCAGTTACTGTGAATAAGAGCTCTCTAGATCAATGCAATTATAATAGGCTCATTGGATTTGCTGTGTGTGTCGTTTTACGTCATGAAGACATGCCTCTCTTGAAACTTAGATGTCGTGGTTTTCGATACAGATTAACACTTGAATCTGATGGCTTCAAATATATCATTCCCAACGATGTTCAGTTAAACGATTCTTTGAGTTTGAGTTGTTATCGAATGGGACATGTCAAGCACACATTCCTATGGAAACATTACTTAATGGACTTTGCAAGCATTGACAAAGTGACCTTTCATGCCCTCAACTTCACGTTTGACTTTTTTCCGAAGTGGCTTGGTTTAAAAGTATATCCCGAGATGTGCGGAATATGCCCTCTTTATAACAAAGAAAAAGATGATAATGGTGATGGTGCATACATTTCAAATTCATTTAGATTTGGTGGACACCGTACCCCACAACTCTGTCGTGTCATTTCAAGGGAGCTTGTAAATAAGTTTAGTGGGAAGGATGCCATCTTGATTGCCACCCGGAGGATATTGAGACCACCAAAGAAAGCAATGTTAGAGGATGTGGTATTTCCTGCTGAGATTGTTGGGAAGCGCGTGAGGTATCGAGTTGATGGATCCAAAATTATGAAGGTAGAGCTATTGTTTCCTATCAACTTCCAAAGTTTTCTTGGACCCAAAGGAACGAAGAACAACGAGTACAAGTTGGAGACTTTTGCCGCAGTGTACATGAATCTGCCTGGCAAAGATGTTGTGTTTGAGTATCCCATCACAGAGGCTTAG 1536 0.4121 MENLAVLVLDGTAIQELPSSLQRLVGLEELSLNKCRRLKIIPSWIGRLTKLCKLDLTDCESLETCPSSIFKLKLTGLDFKGCSKLKTFPQIFEPAESFAHISLTETAIKKLPSSLDFLVGIQTLCLNECRNLESLPSSIGNLNLLTELDFSFCCKLTEIPNDIGRLISLSKLSLQDTAIVNLPESIAHLSRLESLDVSGCRMLECIPQLPPFMKQLLAFNCPSIRRLMMPNPRKEGSAVPDWFPYRGEGNSVTVNKSSLDQCNYNRLIGFAVCVVLRHEDMPLLKLRCRGFRYRLTLESDGFKYIIPNDVQLNDSLSLSCYRMGHVKHTFLWKHYLMDFASIDKVTFHALNFTFDFFPKWLGLKVYPEMCGICPLYNKEKDDNGDGAYISNSFRFGGHRTPQLCRVISRELVNKFSGKDAILIATRRILRPPKKAMLEDVVFPAEIVGKRVRYRVDGSKIMKVELLFPINFQSFLGPKGTKNNEYKLETFAAVYMNLPGKDVVFEYPITEA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1626 511 PANTHER - 2 114 - -
Lja1g1626 511 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 2 114 - -
Lja1g1626 511 Gene3D Ribonuclease Inhibitor 1 231 IPR032675 -
Lja1g1626 511 PANTHER - 73 228 - -
Lja1g1626 511 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 73 228 - -
Lja1g1626 511 Pfam Ribosomal protein S7e 407 506 IPR000554 GO:0003735|GO:0005840|GO:0006412
Lja1g1626 511 Pfam C-JID domain 236 379 IPR045344 -
Lja1g1626 511 SUPERFAMILY RNI-like 2 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1626 Lja-Chr1 17711640 17715815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1626 409 511 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 59.167 5.24e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1626 - - lja:Lj0g3v0310499.1 772.311