Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1624 ATGGACTTCTTAATTAGTCTCATGACCTTTGTGTTCATGTTAATGCCTGCTATCTCTTCCTCCCAATATCTCGGAAACAACATTCTCATGAATCGTAAGATATTACTCCCCAAAAATCAGGAACCAGTTACATCATACGCTGTTATATTTGATGCTGGTAGCACTGGAAGCAGAGTCCATGTCTACAATTTTGATCAGAACTTAGATCTCCTTCCCGTTGAAAACGAACTTGAGTTTTATGATTCGGTTAAACCCGGTTTGAGTTCATACGCTGCTAATCCTGAAGAAGCTGCAGAATCTCTGATTCCACTTCTAAAAGAAGCAGAAAATGTGGTTCCTGTGAGCCAGCAACCCAACACACCCGTTAAGCTTGGGGCAACTGCAGGTTTAAGGCTTTTGGAGGGGAATGCTGCTGAAAATATATTGCAAGCGGTCAGGGATATGCTCAGCAACAGAAGTGCCCTTAATGTTCAATCAGATGCAGTATCTATTCTTGATGGAACCCAAGAAGGTTCTTATCTTTGGGTGACAATTAACTATCTCTTGGGGAAGTTGGGAAAAAGATTTACAAAGACAGTGGGAGTAGTTGATCTAGGAGGTGGGTCAGTGCAAATGACATATGCAGTCTCAAGGAACACAGCTAAAAATGCTCCAAAAGTACCTGAAGGAGAGGATCCATACATAAAGAAGCTTGTACTCCAGGGAAAGAAATATGACCTTTATGTTCACAGTTACTTGCGCTATGGAAGAGAAGCATTTCGTGCAGAGATTTTCAAGGTCGCTGGTGGTTCTGCTAATCCTTGCATTTTAGCTGGCTTTGATGGGGCATATACATATTCCGGAGCAGAGTATAAGGTCTCGGCCCCAGCTTCAGGATCTAACTTGAATCAATGCAGAAAGATAGCTCTTAAGGCTCTTAAAGTGAATGCACCTTGTCCCTATCAGAATTGCACTTTTGGTGGGATATGGAATGGTGGAGGTGGAAGTGGTCAAAAAAATCTTTTCCTTACTTCATCTTTCTATTACCTCTCTGAAGATGTTGGGATCTTTGTGAATAAACCCAATGCCAAAATTCGTCCAGTTGATTTGAAGACTGCAGCTAAACTAGCTTGTAAAACAAATCTTGAGGATGCAAAATCCAAATACCCAGATCTTTATGAGAAAGACAGTGTTGAATATGTGTGCTTGGATCTTGTCTACGTGTACACATTGCTTGTTGATGGATTTGGTCTTGATCCATTTCAAGAGGTTACAGTGGCGAATGAAATTGAATATCAGGATGCTCTTGTGGAAGCCGCATGGCCTCTAGGCACTGCCATAGAAGCAATATCATCATTGCCTAAATTTGAGAGATTAATGTATTTTATTTAA 1371 0.4099 MDFLISLMTFVFMLMPAISSSQYLGNNILMNRKILLPKNQEPVTSYAVIFDAGSTGSRVHVYNFDQNLDLLPVENELEFYDSVKPGLSSYAANPEEAAESLIPLLKEAENVVPVSQQPNTPVKLGATAGLRLLEGNAAENILQAVRDMLSNRSALNVQSDAVSILDGTQEGSYLWVTINYLLGKLGKRFTKTVGVVDLGGGSVQMTYAVSRNTAKNAPKVPEGEDPYIKKLVLQGKKYDLYVHSYLRYGREAFRAEIFKVAGGSANPCILAGFDGAYTYSGAEYKVSAPASGSNLNQCRKIALKALKVNAPCPYQNCTFGGIWNGGGGSGQKNLFLTSSFYYLSEDVGIFVNKPNAKIRPVDLKTAAKLACKTNLEDAKSKYPDLYEKDSVEYVCLDLVYVYTLLVDGFGLDPFQEVTVANEIEYQDALVEAAWPLGTAIEAISSLPKFERLMYFI* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1624 456 Gene3D Exopolyphosphatase. Domain 2 166 424 - -
Lja1g1624 456 PANTHER NOD FACTOR-BINDING LECTIN-NUCLEOTIDE PHOSPHOHYDROLASE 1 456 - -
Lja1g1624 456 CDD NBD_sugar-kinase_HSP70_actin 48 207 - -
Lja1g1624 456 Pfam GDA1/CD39 (nucleoside phosphatase) family 44 448 IPR000407 GO:0016787
Lja1g1624 456 Gene3D - 46 440 - -
Lja1g1624 456 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 456 IPR000407 GO:0016787
Lja1g1624 456 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 165 180 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1624 Lja-Chr1 17686211 17693402 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1624 15 445 Calmodulin-binding Proteins AT3G04080 55.479 2.00e-157 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1624 K14641 - gmx:100781628 645.195