Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1622 ATGGCAGAGTCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGAAGAACTCATCCTTCACTACCTCAGGAAGAAGGTTGCTTCCATACCCTTGCCAGTTTCCATCATTGCTGAGGTTGATATATACAAGTTGGATCCATGGGAATTACCAGGCAAGGCTTTGTTTGGAGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGAAAGTACCCAAATGGTGCCAGGCCAAACAGGGCTGCAGCTTCAGGGTATTGGAAGGCCACTGGGACAGACAAGACCATAGTGGCTTCACTGCCAGGAGGAGGAAGAGCCCAAGATAGCATTGGTGTGAAGAAGGCTCTTGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAGTATCGCCTTGTTGACCACAACAAGCCCATTAAGCTCAAAGACACATCCATGAGGTTAGACGATTGGGTGCTGTGCCGCATTTACAAGAAGTCTAAATGTGCTCTATCACCAACAGAGGCAGGAACTGGTGTAGGTGAGGTGGATCAAGCAGAAGAGCAACTACTCAACGACACTGTTTTCCCAAACACACTGATTTCTCAGAAATCTGTGTCCTTCTCCAATCTGTTGGATGCAATGGACTACTCCATGCTGAGCAGTTTCTTATCAGAGAATCATTACAACCAAACAGGGACTGGATCAAGTGCGGGTTTCAACAATTTGGATCAGCAATCCTCCACAATCAACACCACCAATGGGTACATGTTTCAGATGAAGAACACCCAATTGAACCATTCAGCTTCCAACACTGAAAACACCAGGCCAAAGCGTGAGCTTTCAAACATTGATGAGGAAACGGTTTATCCATCGAAGAAATACCTGAATTCTTCTTGCAACTTCACTAACATCAATGCCCAACTTGAGAAGAATCCACAATGGAACCACCTCATGAAGCAGTCTTTGCTGAATCAGCAATTGCTACTTGGTCCTCATCTGCATTTTCAAGGATAG 1014 0.4517 MAESNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKLDPWELPGKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPGGGRAQDSIGVKKALVFYKGKPPKGVKTNWIMHEYRLVDHNKPIKLKDTSMRLDDWVLCRIYKKSKCALSPTEAGTGVGEVDQAEEQLLNDTVFPNTLISQKSVSFSNLLDAMDYSMLSSFLSENHYNQTGTGSSAGFNNLDQQSSTINTTNGYMFQMKNTQLNHSASNTENTRPKRELSNIDEETVYPSKKYLNSSCNFTNINAQLEKNPQWNHLMKQSLLNQQLLLGPHLHFQG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1622 337 PANTHER OS01G0104200 PROTEIN 4 287 - -
Lja1g1622 337 Coils Coil 335 337 - -
Lja1g1622 337 Gene3D NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
Lja1g1622 337 Pfam No apical meristem (NAM) protein 7 138 IPR003441 GO:0003677|GO:0006355
Lja1g1622 337 SUPERFAMILY NAC domain 3 165 IPR036093 GO:0003677|GO:0006355
Lja1g1622 337 ProSiteProfiles NAC domain profile. 6 165 IPR003441 GO:0003677|GO:0006355
Lja1g1622 337 PANTHER NAC TRANSCRIPTION FACTOR 56 4 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1622 Lja-Chr1 17640530 17642814 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1622 4 337 NAC Transcription Factor Family AT3G04070 52.722 1.95e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g1622 NAM 2.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1622 - - vun:114194335 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1622 1 17640530 17642814 Lja1g1622 1 17640530 17642814 ECH