Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1620 ATGGAAGAGCCGATTGTGTTGAACAAAGGTGATGAGCCTCTGGATTTGCCTCCAGGGTTCAGGTTCCACCCAACAGATGAGGAGATAATAGTTTATTATCTGACTGAGAAGGTGAAGAATAGTAGTTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGATTTACCAAAGAAAGCTAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGCCAGAAGGATAGGAAGTACCCAACGGGGATGAGGACGAACCGAGCAACTGAATCCGGGTACTGGAAGGCAACCGGGAAAGATAAGGAGATTTTCAAAGGAAAAGGGAACCTTGTTGGGATGAAGAAGACCCTCGTGTTCTATAGAGGTAGAGCTCCGAAGGGAGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTTACAGCCTCCCTAAGATAGCAAAGGATGAATGGGTTGTGAGCAGGGTTTTCCACAAGAGCACAGATGTGAAAAAGTCCCCAATCCCTGGCCTATTGAGGATGAACTCAATTGGGGATCAGCATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTTCTTATAACAAGCCTTCAAGCTTTAATGAAGATGACTTCAAAGGAACCAACCCAATCTCATCATCAAGTACTAAATCACCATCGGACGGCTATTATCTCCCCAGCTTCTCCATCAACAATCACCACCACATGATCAAGCCAGAAGACCAAAGGAACTATGAGATGAACACTATTCCCACCATTAACTACACCTCCAATCTCAGCAACCCAATGGGGAACAACAACAACACATTCTCACACTCCCAATTTCAGAAGAACTTGTTGTTACCTGACTATTATGTGCACCAAAACAGGATCAGTGGTTTTGGAAACAACAACAACAACCATGACGATCAAGCTTTCCTAAGAGCATTTGCATCCAACAATCACAATGATTACATTTCTGTATTGGAAAAACAGTGCAAGGTGGAGCAATTCTCTTCAAACCACTCTCAAGACACTGGCCTCAGCAACGACAGAAACACCACAGAAACATCCTCAGTTGTTTCAGGGAGAAATAGGGCATCATTGTATGAGGATCTTGATCAAGGTCCCGCATCAGTCGCGCGAGCTTTCTCAGATTTGGAATGCTTGTGGGACTACTAG 1194 0.443 MEEPIVLNKGDEPLDLPPGFRFHPTDEEIIVYYLTEKVKNSSFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYSLPKIAKDEWVVSRVFHKSTDVKKSPIPGLLRMNSIGDQHDLLDYSSLPPLMDPSYNKPSSFNEDDFKGTNPISSSSTKSPSDGYYLPSFSINNHHHMIKPEDQRNYEMNTIPTINYTSNLSNPMGNNNNTFSHSQFQKNLLLPDYYVHQNRISGFGNNNNNHDDQAFLRAFASNNHNDYISVLEKQCKVEQFSSNHSQDTGLSNDRNTTETSSVVSGRNRASLYEDLDQGPASVARAFSDLECLWDY* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1620 397 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Lja1g1620 397 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Lja1g1620 397 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 365 - -
Lja1g1620 397 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 365 - -
Lja1g1620 397 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Lja1g1620 397 MobiDBLite consensus disorder prediction 203 231 - -
Lja1g1620 397 MobiDBLite consensus disorder prediction 344 366 - -
Lja1g1620 397 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1620 Lja-Chr1 17610993 17613265 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1620 1 245 NAC Transcription Factor Family AT5G18270 66.798 3.95e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja1g1620 NAM 5.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1620 - - aprc:113861501 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1620 1 17610993 17613265 Lja1g1620 1 17610993 17613265 ECH