Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1612 ATGACCATGGATGTGTGCCAAAATGTATCAGTTCCCAGTGAGTGCCAGAAGCAAGAGCAACAACAAGCCCTTGCTACTAATTGCTCCATTGATGACCTCTTCTCTGCTCAGAACATGGAAGTGGATAATGGCTTGGAATGGCTCTCAGAATTTGTTGAAGATTGCTTTTCAACCCCCTCAGGCTGTGTTTTGGTTCCAGCCAGTGTTCAAACTGCAAGCACAAGCTCCAAGTCCAAACCTTTAGGCACCACTGTGCAGAAACCTTTGGAAAGTGAGTCTCCTTTGCAGAAAAATTCAGTGCCTGGGAAGGCCAGGAGCAAAAGGAAGAGGCTTTCAGCTCCAAGAACCAAAGACCCTTTAAGCATGTGGTCACACCATTTGAACCCACAAAATGAGGCCTTTGGTCCTGACCCTCCTCTGCTCAAACAGGACTATTGGTTGGCAGATAGTGAACTTATTGTCAAGAAGGAAGAGCAAGAGGTGACTACCAAAGAAGAACAAGAAGTGGTGGTGGTGGTGAAGAAGGAGATTATTGTGAAGGAGGAATTTGAAGATGGTGAGGTTAGCAATAATGGTCAAAACCCAATGCCAAGGAGGTGCACCCATTGCTTGTCTCAGAGGACCCCACAGTGGAGGGCAGGGCCATTGGGGCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCATCCAGAGTATAGGCCAGCCAAGAGTCCCACTTTTGTTAGCTTTTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTCCTCTTTCTTCCATTCCTATTAGTAAGCAGTAG 825 0.4703 MTMDVCQNVSVPSECQKQEQQQALATNCSIDDLFSAQNMEVDNGLEWLSEFVEDCFSTPSGCVLVPASVQTASTSSKSKPLGTTVQKPLESESPLQKNSVPGKARSKRKRLSAPRTKDPLSMWSHHLNPQNEAFGPDPPLLKQDYWLADSELIVKKEEQEVTTKEEQEVVVVVKKEIIVKEEFEDGEVSNNGQNPMPRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLHPEYRPAKSPTFVSFLHSNSHKKVMEMRMAPLSSIPISKQ* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1612 274 PANTHER GATA TRANSCRIPTION FACTOR 3 269 - -
Lja1g1612 274 MobiDBLite consensus disorder prediction 73 123 - -
Lja1g1612 274 Gene3D - 190 259 IPR013088 GO:0006355|GO:0008270
Lja1g1612 274 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
Lja1g1612 274 CDD ZnF_GATA 199 246 IPR000679 GO:0006355|GO:0043565
Lja1g1612 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 258 - -
Lja1g1612 274 Coils Coil 147 167 - -
Lja1g1612 274 Pfam GATA zinc finger 200 234 IPR000679 GO:0006355|GO:0043565
Lja1g1612 274 ProSiteProfiles GATA-type zinc finger domain profile. 198 230 IPR000679 GO:0006355|GO:0043565
Lja1g1612 274 MobiDBLite consensus disorder prediction 73 100 - -
Lja1g1612 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 269 - -
Lja1g1612 274 SMART GATA_3 194 244 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1612 Lja-Chr1 17472097 17473812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1612 45 262 C2C2-Gata Transcription Factor Family AT2G45050 42.202 1.34e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja1g1612 GATA 3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1612 - - gmx:100812088 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1612 1 17472097 17473812 Lja1g1612 1 17472097 17473812 ECH