Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1599 ATGTATAAAAGCAAGCATAAGAATGGGTCCAATTTTGTAATCTTCATCATCTTGTTGAAAATGTGGAAGGGAAAACTTAGTCACACCATACTCCTTCTCCTCCTCCTGTTCCAACAAAACTGCCTCGCCGCCAACCACCACCAACCACCATGTCCCCCGTCATCATGCGGCAAACTCCTCAACATATCCTACCCATTCCGCCTCAAAACCGACCCGACCCACTGCGGCGACCGCCGCTACCAGCTAGACTGCGACACCACCACCACCGGTCCAACCCTAACTCTTCCCTCAGGAAAATTCTACGTACAAGAAATCGATTACAAGCGATTCACACTCCAATTAACCGATGCGGGTGCAGTGGAAGACGCTGCGTGCTCCTTCATCCCTCGCAATTTCCTCTACCAACGCAGCTTCAAGGATTTCATCGGTCCAGATGATTTCGGATCAGAACCGTTCGTTTTGTCCTCACATCCTCCATCAATAGCTTACCTGAATTGTTCCAATTCCGTCGCTGATGATGATCCTCGATACGTGAAGGTGAAGGTGGACACGAATCGGTGTGGTGCTCCCGGGTATGAGAATGTCTATGCGGTGGTGGAGCCATCTGTGAGTGACATTAGGGTTGGGTGCGGTCTTGTGGTGGCTACGCTGGGTCGTGGTTGGAGGAAGGGGGAGATTGAGAACGGGAACGTTTCCTATGGTGATATCCATAGGATGCTTGTTGAGGGAGTTACGGTGTCGTGGTTGCCTGTGATTTGTGAAGATCGCTGTGGAAAGAGAACCAGATGCGAGGTTGTCTATGACGGTGATGGTGATGAATTGGAATCAGAAGGAAAAGTTCAGTGTGATAAGCGCTATTGCCATTACACCTACCACACAACTGACAAGTGTGGACTTTCGCAACAGATTCTTGGTTATACTCGAGCTTATCTTAAAGGCATTATTATCGGAATTGGCAGTAGAATCACATTTAGCACAAAACAACTAGGCAGGCCAGTGGACCTTCAATATTTTGATGAAGGAGTGTTCATAGGACGAAATATTCTAGCACCATTAATTGCAGCCAAATATCTATTTGGAGTTGCACTTCTCCTTGCGTTATTGCTCTATAAGTGGCGAAGAAGGCACTTGTCAGTGTATGAAAACATTGAACATTTCTTGGTAGACAGCAATTTAAGCCCCATTAGGTACGAGTACAAAGAAATCAAGAAAATGACCAGAGGTTTCAATGTGAAATTGGGTCAAGGAGGATTCGGATCTGTGTACAAAGGTAAGCTACGAAGTGGACTTGATGTAGCCATAAAGATGCTGACCAAATCCAATGCTAATGGCCAAGATTTTATCAGTGAAGTAGCTACCATTGGAAGAATACATCACATTAATGTGGTGCGTCTTGTTGGATATTGTGTTGATGGAAAAAAGCGTGCTCTTGTTTATGAATTCATGCCTAATGGGTCATTGGACAAGTACATTTTCTCTAAAGAAGGAAGTGCCTGGTTAAGTTATGATCAAATATATGAAATTTCTCTTGGGATAGCTCGTGGGGTGGCGTATCTTCATCAAGGGTGTGATATGCAAATTCTGCATTTTGACATCAAGCCTCACAACATTCTTCTAGATAAAGATTTCATTCCAAAGGTTTCTGATTTTGGACTTGCCAAGCTGTATAATGTGAATGATAGCATTGTCACTTTGACAGCAGCGAGAGGAACTTTGGGTTACATGGCTCCGGAATTGTTCTACAAAAATATTGGAGGTGTGTCTTACAAGGCTGATGTGTATAGCTTTGGAATGCTTTTAATGGAAATGGCGGGTAGGAGGAGGAACTCAAATCCTCATGCAGAGCATTCTAGCCAACAGTACTTCCCATTTTGGATCTATGATCAGTTTCAAGAAGGGAAAGATGTTGAGATGGAAGAATATGCGTCCGAAGAGGGAAAGGCTTTAGCAAAAAAGATATTCATGGTTGCACTTTGGTGTGTTCAGTTTAAACCGAGTGATCGTCCTTCGATGAAGAAGGTAGTAGAGATGCTTGAAGGGCCAATTGAAAGCCTTGAAATGCCTCCAGCAAGGCCTTCTTTTTATCCAAGTGAAACATTTAAACATGATGGTGGAAGCAATTCTGACCGAACATCATGGAGTGGTTCCACTAGTTCTGATAGGTATCTTGGCGAAACCTTAACTAATCAGTCATTGGAGAATAGTGCTTGA 2211 0.4401 MYKSKHKNGSNFVIFIILLKMWKGKLSHTILLLLLLFQQNCLAANHHQPPCPPSSCGKLLNISYPFRLKTDPTHCGDRRYQLDCDTTTTGPTLTLPSGKFYVQEIDYKRFTLQLTDAGAVEDAACSFIPRNFLYQRSFKDFIGPDDFGSEPFVLSSHPPSIAYLNCSNSVADDDPRYVKVKVDTNRCGAPGYENVYAVVEPSVSDIRVGCGLVVATLGRGWRKGEIENGNVSYGDIHRMLVEGVTVSWLPVICEDRCGKRTRCEVVYDGDGDELESEGKVQCDKRYCHYTYHTTDKCGLSQQILGYTRAYLKGIIIGIGSRITFSTKQLGRPVDLQYFDEGVFIGRNILAPLIAAKYLFGVALLLALLLYKWRRRHLSVYENIEHFLVDSNLSPIRYEYKEIKKMTRGFNVKLGQGGFGSVYKGKLRSGLDVAIKMLTKSNANGQDFISEVATIGRIHHINVVRLVGYCVDGKKRALVYEFMPNGSLDKYIFSKEGSAWLSYDQIYEISLGIARGVAYLHQGCDMQILHFDIKPHNILLDKDFIPKVSDFGLAKLYNVNDSIVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRRNSNPHAEHSSQQYFPFWIYDQFQEGKDVEMEEYASEEGKALAKKIFMVALWCVQFKPSDRPSMKKVVEMLEGPIESLEMPPARPSFYPSETFKHDGGSNSDRTSWSGSTSSDRYLGETLTNQSLENSA* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1599 736 SUPERFAMILY Protein kinase-like (PK-like) 392 678 IPR011009 -
Lja1g1599 736 ProSitePatterns Protein kinases ATP-binding region signature. 413 435 IPR017441 GO:0005524
Lja1g1599 736 ProSiteProfiles Protein kinase domain profile. 407 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1599 736 Gene3D Transferase(Phosphotransferase) domain 1 482 687 - -
Lja1g1599 736 Pfam Protein tyrosine and serine/threonine kinase 411 678 IPR001245 GO:0004672|GO:0006468
Lja1g1599 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Lja1g1599 736 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 26 711 - -
Lja1g1599 736 Pfam Wall-associated receptor kinase galacturonan-binding 51 116 IPR025287 GO:0030247
Lja1g1599 736 SMART serkin_6 407 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1599 736 CDD STKc_IRAK 413 680 - -
Lja1g1599 736 Gene3D Phosphorylase Kinase; domain 1 385 481 - -
Lja1g1599 736 MobiDBLite consensus disorder prediction 700 736 - -
Lja1g1599 736 MobiDBLite consensus disorder prediction 688 736 - -
Lja1g1599 736 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 711 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1599 Lja-Chr1 17345135 17348261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1599 396 712 Receptor kinase-like Gene Family AT5G38280 49.533 3.79e-103 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g1599 PK_Tyr_Ser-Thr 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1599 - - lja:Lj0g3v0275229.4 974.156