Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1598 ATGTCGACTTTTCACAAATTTCCACTCACGTTGTTGTTGACGTTGTTGTTGTCACTGCTAGCAAATCCTGCAATAGCCAACACCCAGCGGTGCACAGAAAAATGCGGTGGGGTCCGCATCCAATTCCCCTTCTATCTGCAAAACACCACCACCGGCAACAACCACCCTCGCGGCTTCGATCTCCACTGCACCGAAAACCAAGAAACCGTGCTGAATCTACCATCCCTTCAAGTAAAACTGTTCATCAAATCCATAAACTACAAATCTCAGCAGATTGAAATCTACGATCCTCAGAACTGCCTCTCGAGCCAGCTCTTCTCCATCGGCAACGCTTCAATATCTCCGTTCAAGTTCCAACCGTTGGGCGGGCCGTTGAACGCTTCGTTCTTCCGGTGCGGCGATTCGAGATCATGCCCGATTTTGGCGCGTGGAACTGAAGCTGATTTTGTTGATCCTGAACTGGTTTCGTGCACGAAGTTGCGTGATGTTTTGTCGGTGGATTGGCTTTGGGATGATGTGTGGAATGAGGAGGAGAATAGTTTGGTTATGGAGTGGTCGGAGCCTGAGTGTGGTTATTGTGAAGAACAGGGGCTGAAATGTAGATGGAAAAATGGTACCAGTGGTGGAGGACGAGAAGGAGAAACTGAATGTTTCATCTGCAAAACAAGCAGATTTTCAACTTCAGATATTGTGCGAATTGTTGCAGCGGCAATTGGTGGTTTGATTCTACTGCTGCTGTTGGTCCTTGCATTGCACCGGATTTATCGCTACTTTAAGATGAAAGGAGAAGACTTTGCAAGGATAGAAAAGTTCTTGGAGGATTATAGGGCAATGAAGCCTACAAGATTCACCTATGCTGATATCAAGAGAATCACAAATGGTTTCAAAGAGTGCTTAGGTGAAGGGGCACATGGAGCAGTTTTCAAAGGCATGCTCTCCCAAGAGATTCTTGTTGCTGTGAAGATACTCAATGAGACACAGGGAGATGGGAAGGATTTCATCAATGAAATTGGAACCATGGGGAAAATTCACCATGTCAATGTGGTTCGCTTACTCGGATTCTGCGCGGACGGGTTCCACCGTGCTCTTGTCTATGATTTCTTCCCAAACGGTTCACTGCAGAGATTCTTAGCTCCACCAGATAACAAGGATGTTTTCCTTGGGTGGAGGAAGTTGCAGCAGATTGCTCTTGGTGTTGCAAGAGGGATTGAGTATCTCCATGTGGGTTGTGAACATAGAATACTCCACTTTGACATCAATCCCCACAATGTGTTAATAGATGATCACTTCATTCCCAAAATTACTGATTTTGGCTTAGCCAAATTGTGTCCCAAAAATCAAAGCACAGTGTCCATGACTGCGGCTAGGGGAACCTTGGGCTACATTGCACCTGAAGTTTTCTCAAGAAACTTTGGTAATGTGTCTTATAAATCTGACATTTACAGCTATGGAATGTTGCTGCTAGAGATGGTTGGAGGAAGAAAGAACACAAACATGACAGCTGAGGAAACTTTCCAGGTTCTGTACCCGGAATGGATCCATAATTTGCTTGAAGGTAAAGATGTGCAGGTTAATATTGAGGAGGAGGGAGATGTTAGCATTGCCAAGAAACTTGCCATTGTTGGTCTTTGGTGCATTCAGTGGAACCCGGTGGACCGACCGTCCATGAAAACTGTGGTGCAGATGCTTGAAGGGGAGGGAGACAAGTTAATGGCACCCCCTACTCCTTTTGATTCTCCTGGTTCTTTCAGAATAAATGCAATTATTCCAGCCAGACATCTGAATTCAGGGTTGGAAGTTATTCAGGAGATAGAGTAA 1818 0.4538 MSTFHKFPLTLLLTLLLSLLANPAIANTQRCTEKCGGVRIQFPFYLQNTTTGNNHPRGFDLHCTENQETVLNLPSLQVKLFIKSINYKSQQIEIYDPQNCLSSQLFSIGNASISPFKFQPLGGPLNASFFRCGDSRSCPILARGTEADFVDPELVSCTKLRDVLSVDWLWDDVWNEEENSLVMEWSEPECGYCEEQGLKCRWKNGTSGGGREGETECFICKTSRFSTSDIVRIVAAAIGGLILLLLLVLALHRIYRYFKMKGEDFARIEKFLEDYRAMKPTRFTYADIKRITNGFKECLGEGAHGAVFKGMLSQEILVAVKILNETQGDGKDFINEIGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQRFLAPPDNKDVFLGWRKLQQIALGVARGIEYLHVGCEHRILHFDINPHNVLIDDHFIPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNMTAEETFQVLYPEWIHNLLEGKDVQVNIEEEGDVSIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLEGEGDKLMAPPTPFDSPGSFRINAIIPARHLNSGLEVIQEIE* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1598 605 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Lja1g1598 605 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 48 605 - -
Lja1g1598 605 ProSiteProfiles Protein kinase domain profile. 293 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1598 605 Pfam Wall-associated receptor kinase galacturonan-binding 31 96 IPR025287 GO:0030247
Lja1g1598 605 Gene3D Transferase(Phosphotransferase) domain 1 368 571 - -
Lja1g1598 605 Gene3D Phosphorylase Kinase; domain 1 268 367 - -
Lja1g1598 605 SUPERFAMILY Protein kinase-like (PK-like) 275 564 IPR011009 -
Lja1g1598 605 PANTHER RUST RESISTANCE KINASE LR10-RELATED 48 605 IPR045874 GO:0004672
Lja1g1598 605 Pfam Protein kinase domain 296 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1598 Lja-Chr1 17339375 17342253 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1598 189 576 Receptor kinase-like Gene Family AT1G66910 44.203 3.24e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g1598 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1598 - - gmx:100819302 854.744