Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1596 ATGGCAATTGCACGCACTGGAGTCTACGTCGATGACTATTTGGAGTATGCCAATACATTGCCTGCTGAGCTTCAGAGACTGCTCAACACCGTCCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAAACAAAGTACTGTATGGGGTTCTCATCACATGGCTCTAGGAAGGGTAATAATCATTACTACAATAGTAACAGTTACGCGAACGAGGATGACGATGCCGCTATTGAGAAAATGCGAAAAGACATCGAGACATATCAGGATAATGCATTGAGTCTGTGTACTGAGAAGGTTTTGTTGGCACGACAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAACTTCGCCGAAGATTTAAAGCAAGAGGGAAAAATAGCACAAGATGAACCAGCGATTCTTCCCCCATTGCCTATAGTCCCTAAACCTGAAAAGCGCAGGCAAGTCGTATATGGAACACCTCAATCGAAGAGAATTGATTACAGGGATAGAGACTGGGATCGGGAACGTGATAGGGACTTTGAGCTAATGCCTCCGCCAGGAAGTCATAAGAAGGACTATGTAATCCCCATGGATGTTGATCAACCCATTGATCCAAATGAGCCAACATACTGTGTTTGTCATCAGGTATCTTTTGGAGATATGATTGCTTGTGATAATGAAAATTGCCAAGGTGGTGAATGGTTCCACTATGCTTGTGTTGGCCTGACACAAGAGACAAGGTTCAAGGGGAAGTGGTATTGTCCAACTTGCAGATTACTACCACAATGTCAATGA 813 0.4342 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSRKGNNHYYNSNSYANEDDDAAIEKMRKDIETYQDNALSLCTEKVLLARQAYELIDSHVKRLDEDLNNFAEDLKQEGKIAQDEPAILPPLPIVPKPEKRRQVVYGTPQSKRIDYRDRDWDRERDRDFELMPPPGSHKKDYVIPMDVDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYACVGLTQETRFKGKWYCPTCRLLPQCQ* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1596 270 PANTHER PHD FINGER PROTEIN ING2 2 266 - -
Lja1g1596 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 265 IPR013083 -
Lja1g1596 270 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 128 IPR024610 -
Lja1g1596 270 PANTHER INHIBITOR OF GROWTH PROTEIN 2 266 IPR028651 -
Lja1g1596 270 CDD PHD_ING 216 263 - -
Lja1g1596 270 Coils Coil 24 44 - -
Lja1g1596 270 Gene3D - 5 126 - -
Lja1g1596 270 CDD ING_plant 19 125 - -
Lja1g1596 270 ProSiteProfiles Zinc finger PHD-type profile. 214 266 IPR019787 -
Lja1g1596 270 SUPERFAMILY FYVE/PHD zinc finger 192 265 IPR011011 -
Lja1g1596 270 Coils Coil 75 95 - -
Lja1g1596 270 SMART ING_2 9 128 IPR024610 -
Lja1g1596 270 SMART PHD_3 216 264 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1596 Lja-Chr1 17284842 17289723 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g1596 ING 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1596 K11346 - gmx:100787916 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1596 1 17284842 17289723 Lja1g1596 1 17284842 17289723 ECH