Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1592 ATGCCAGAGTTGAGGAGTGGAGCTAGAAGGTCGAAGCGGCTTGGAGATCTTCAGACCGGTCCACTACCTGCTGATCAAGGAGAGAATTGGGCACAGCCTGCTCAAAACAGGACGACTAGGAGGAGAGTTGGAGGTGGTAGAGGAAGAGGCGGTAATGCCACAGCTGTAGGTAAAGGGCCTTCACCAGCTGTACCAACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGGTTGATCTAGATCCTGAACCTTGTGAATTCCTTCCAGAACCTGTTGCTTTAGGGGTTCCGGAACCCGGTTACAATAACGTAGAAGTTGTGGCCAATAATAATATTGCTATGGAGGGTGGAAGTGGAGAGAAGGTGGTGGCAGCCGAAGAAGAAGCAAGCACAGCCCCAGTCCCTGAGAGGGTTCAAGTTGGTAACTCTCCTGTATATAAGATAGAAAAGAAGTTGGGTAAGGGTGGTTTTGGTCAAGTTTATGTTGGCAGAAGGGTTAGCGGCGGTTCGACTGATCGAACTGGTCCTGACGCAATTGAGGTTGCACTCAAGTTTGAGCATAGAAATAGTAAAGGTTGTAATTATGGGCCTCCTTATGAGTGGCAAGTCTACAGTACTCTGAATGGTTGCTATGGCATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTATATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATATGTGGAATAATCTTGGCCAGTCGATGTCGCCAAGTATGGTTGCGTGCATTGCTGTGGAAGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCACGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGATCGGCTGATGAGAAGAAGTTATATCTTATTGATCTTGGCTTGGCTTCTAAATGGAAGGATGCGTCAACTGGTCAACATGTTGAATATGATCAGAGACCCGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCTCATTTAGGTAGGACTGGAAGTCGAAGGGATGATCTTGAGTCACTGGCATACACGCTAATATTTCTCATAAAAGGGAGATTACCATGGCAGGGTTATCAGGGCGACAACAAAAGTTTTCTTGTTTGTAAGAAAAAGATGTCCACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCCGCTCCATTTAAGCATTTCTTAGAAGCAGTCACTAACATGAGATTTGATGAAGAGCCAAATTATTCCAAGCTTATATCAATTTTTGACAGCTTGATTGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTAAAGGTCGGTCAAAAGCGAGGAAGGATGCTTATAAATCTGGAAGAAGATGAGCAGCCTAAGAAGAAAGTGAGATTGGGGAGTCCTGCTACTCAATGGATATCAGTGTATAATGCACGCCGTCCCATGAAGCAGAGATATCACTATAATGTTGCGGACAATAGGCTCCGGCAGCATGTAGACAAGGGTATTGTTGATGGCTTGTACATAAGCTGTGTGGCATCTTCAGCGAATTTGTGGGCCCTGATCATGGATGCCGGGACAGGTTTTTCCGCACAGGTTTATGAGTTATCGCCAGCCTTTCTACATAAGGATTGGATTATGGAGCAATGGGAGAAAAATTTCTATATCAGTTCAATAGCTGGTGCAGTGAACGGAAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAGTCCTACAAAGTAAGCGAATCATTTCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCACTCGCTGGGGTGTTGTTATGTCTAGGAATGCTGGGTTCTCTGATCAGGTTGTGGAGCTTGACTTTTTATACCCAAGTGAAGGAATTCATCGACGGTGGGAGAATGGTTACCGAATTACTTCTATGGCTGCTACTAATGACCAGGCAGCCTTCATTCTGAGCATACCTAAACGCAAATTGCTTGATGAAACTCAAGAGACTCTGCGTACATCTGCTTTCCCCAGTACCCATGTAAAGGAGAAATGGTCGAAAAACCTCTATATTGCCTCAATATGTTATGGGCGAACTGTTTGCTAG 2133 0.4501 MPELRSGARRSKRLGDLQTGPLPADQGENWAQPAQNRTTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLVDLDPEPCEFLPEPVALGVPEPGYNNVEVVANNNIAMEGGSGEKVVAAEEEASTAPVPERVQVGNSPVYKIEKKLGKGGFGQVYVGRRVSGGSTDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDMWNNLGQSMSPSMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGSADEKKLYLIDLGLASKWKDASTGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSPELMCCFCPAPFKHFLEAVTNMRFDEEPNYSKLISIFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLRQHVDKGIVDGLYISCVASSANLWALIMDAGTGFSAQVYELSPAFLHKDWIMEQWEKNFYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGTRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWENGYRITSMAATNDQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1592 710 PANTHER CASEIN KINASE-RELATED 102 684 - -
Lja1g1592 710 MobiDBLite consensus disorder prediction 1 74 - -
Lja1g1592 710 SUPERFAMILY Protein kinase-like (PK-like) 148 436 IPR011009 -
Lja1g1592 710 SMART serkin_6 148 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1592 710 CDD STKc_CK1 148 423 - -
Lja1g1592 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
Lja1g1592 710 PANTHER OS01G0772600 PROTEIN 102 684 - -
Lja1g1592 710 Gene3D Transferase(Phosphotransferase) domain 1 112 466 - -
Lja1g1592 710 ProSitePatterns Protein kinases ATP-binding region signature. 154 186 IPR017441 GO:0005524
Lja1g1592 710 Pfam Protein kinase domain 148 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1592 710 ProSiteProfiles Protein kinase domain profile. 148 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1592 Lja-Chr1 17250731 17258393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1592 126 329 EF-hand Containing Proteins AT4G04700 24.645 1.75e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lja1g1592 Pkinase 2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1592 - - gmx:100801967 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1592 1 17250731 17258393 Lja1g1592 1 17250731 17258393 ECH