Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1578 ATGGAGATTCAATTCCAGCAACCAAATTTGCAACAACATCAGAAAGCAGGAACCAAAGGAGGAAAATTCAAAGGGAGAAACAGAAACAGCAACACAAACAAATTTGTTGGAGTGAGACAAAGGCCATCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACAGCAGAAGAAGCAGCAAGAGCCTATGATGAAGCTGCATGCCTCCTTCGCGGATCGAACACGCGAACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTCGCTTCGCGGATTCGAAACCTTCTTAACAACAAAAAAGGTAACAAAAAACAGGAAGGTGTTGTTGATGTTGGTGTTGATGTTGATGTTCCTGCCCCAAGTGCTAGCACAACTAGCACTAGTAGTAACACAAGCAATAGTGACAAAAATGATCATAACTCTCTTTCTAGTGGGAAAGTTCAAAACACAATGCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAAGGAGGATTTTCAATCTTGTCCACCTCAATCCAACTTTTCTTGGGGTTTTGGACCGGTTTTTGATCGTTTTCCCATTGCTCAAATTTTGGACATGCCTAAGACTGATGGCATGATTGATGCAGCTAGCTTGGAGCTTTCAGAATTTGAGAGAATGAAAGTTGAGAGACAGATATCAGCTTCACTCTATGCAATTAATGGGGTCCATGAGTACATGGAAACTGTTCAGGATTCCAATGAAACTCTGTGGGATCTTCCACCCTTGTGCTCATTGTTCTGTTAA 810 0.421 MEIQFQQPNLQQHQKAGTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKGNKKQEGVVDVGVDVDVPAPSASTTSTSSNTSNSDKNDHNSLSSGKVQNTMLFDDAYKPDLSNCKEDFQSCPPQSNFSWGFGPVFDRFPIAQILDMPKTDGMIDAASLELSEFERMKVERQISASLYAINGVHEYMETVQDSNETLWDLPPLCSLFC* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1578 269 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 11 256 - -
Lja1g1578 269 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Lja1g1578 269 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 MobiDBLite consensus disorder prediction 1 16 - -
Lja1g1578 269 MobiDBLite consensus disorder prediction 131 157 - -
Lja1g1578 269 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 MobiDBLite consensus disorder prediction 128 157 - -
Lja1g1578 269 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 256 - -
Lja1g1578 269 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g1578 269 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Lja1g1578 269 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1578 Lja-Chr1 17149786 17150814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1578 12 269 AP2-EREBP Transcription Factor Family AT5G19790 42.264 9.40e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g1578 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1578 K09286 - gmx:100796898 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1578 1 17149786 17150814 Lja1g1578 1 17149786 17150814 ECH