Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1574 ATGATCAGCATCCAAATTCAATCTTGCCACACCATCCTCCCCTCTGAACCCACCCCTAACGAAAAACTCTACTCTTTGTGCGAACAAATCAAGCTCCGAACCCATGCTCCCCTCCTCTATGTGTACAAGCCGCACAACCACAAAAACCCGTCAACCTTCATTCAGACTCTCATCAACTCTCTCAGCCAAGCTTTAGTAATTTACTACCCACTAGCAGGGAGGTTGAGTTGGATTGAAGGAAGTAGATGGGAACTCCATTGCAATGCCAAGGGAGCACAATTCTTACAAGCCAAATGCGAAGAACAAGTAAGCTTAGATGACTTGGGTGATTTCGCACCAACCCATTTGGTCTCACCACTCATCCCCAACATTGATTATGATGTTCCTATTGAAGAAATCCCTCTTCTGGCGGTGCAATTAACAAAGTTCTGTTGTGGCGGTTTTACATTAGGCGTGGCGTTTTGTCGCGCCGTAATTGACGGGCCAGCATCCATGCGTTTCATGAACACGTGGGCGAAGCTGGCACGAGGAAAGGGTTTGGACCCGATGATAGATATGCCATGTCACGACCGCAACCGTCTAGATTCACGAAAATTAAATCATTCAGAGCTGAAGTCGCACGCAGGCCAACATCGTGAGTTCCACACGCCTCCTGCTTGGGTAGGTGGGTTTCGAGAAACCAGGGCAGTGGTTGCTCTAGTGAAACTAACGAGAGAACAAGTGGTAAAACTCAAGATGAAAGCTAGTAGTTCCAACGCTGCATCAACAAAACAGAAAGCTTATTCGAGTTTTGAGGTTGTTGCAGGTTACCTTTGGAAATGCGTGAGCAAAGCACGCTACGCGGGAAATGGTGAACAACCCACGAGGTTGTCGACACTGGTTAATTGTAGAAACCGATTGAGGCCACCACTCCCTGATGGTTATGCGGGAAACACAGCGTTTCCAACCGTGACACCAACGAGCTCGTTTCACGACATCATCCACATGCCTTTGAGTTATGTCGTGGAGAATGTTCGAGAAGCGCTTGAAATGGTGAATGAGGAGTTTGTGGGGTCCTCACTTGATTACATTGCTAGGGAGAAGGATATTGAATCAATGAGGTATAATTTTCACTACCCTGCACCAAGTGTGCACAAGGGACCTTCTAAAGGGAACCCGAACCTTTTTGTTGTGAGTTGGATGAATTTCTCGTTTAAAGATGCGGATTTTGGGTGGGGGGAGCCTATTTATTTTGGGCCTGGGTACTTGGATTCTGAAGGGAAGGCCTTCCTTTTGAATGATGCTGATAGGAATGGGCTCGTTGTGGCTATTTCTTTGGACATGTCTCATGTGGATGCTTTCAGGAAATTGTTTTATGATGGCATTGAAGATGTTTTCCCCTCTTCCAAATTGTGA 1395 0.4659 MISIQIQSCHTILPSEPTPNEKLYSLCEQIKLRTHAPLLYVYKPHNHKNPSTFIQTLINSLSQALVIYYPLAGRLSWIEGSRWELHCNAKGAQFLQAKCEEQVSLDDLGDFAPTHLVSPLIPNIDYDVPIEEIPLLAVQLTKFCCGGFTLGVAFCRAVIDGPASMRFMNTWAKLARGKGLDPMIDMPCHDRNRLDSRKLNHSELKSHAGQHREFHTPPAWVGGFRETRAVVALVKLTREQVVKLKMKASSSNAASTKQKAYSSFEVVAGYLWKCVSKARYAGNGEQPTRLSTLVNCRNRLRPPLPDGYAGNTAFPTVTPTSSFHDIIHMPLSYVVENVREALEMVNEEFVGSSLDYIAREKDIESMRYNFHYPAPSVHKGPSKGNPNLFVVSWMNFSFKDADFGWGEPIYFGPGYLDSEGKAFLLNDADRNGLVVAISLDMSHVDAFRKLFYDGIEDVFPSSKL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1574 464 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 6 460 - -
Lja1g1574 464 Pfam Transferase family 3 451 - -
Lja1g1574 464 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 460 - -
Lja1g1574 464 Gene3D - 1 215 IPR023213 -
Lja1g1574 464 Gene3D - 225 454 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1574 Lja-Chr1 17102946 17104340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1574 2 453 Monolignol Biosynthesis Gene Families AT5G48930 34.707 6.17e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1574 K13065 - gmx:100775549 631.713