Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1572 ATGGTGAAGATACAGTGTTCATACACCGTGACTCCCTCCGAGACCAAACCAACACCACCACCAACACTCTCTCTTTCCCACTGCGATCAACTCAAACTCCCCAACCACGGTTCTCAAATTTACCTCTACACTCCCTCCACCACCACCACTGAACCACCTCCACCACTCTCTATTTCAATCCACACCCTCAGAACCTCCCTCAGCAAAGCACTCACCCACTACTACCCCTTCGCCGGCCGATTACACTGGATCGAAGCTGGTCGCATGGAACTCCTCTGCAACTCCAAGGGAGTTCACCTCCTAGGAGCAACCTCCGATGTCCCTTTCGATGATTTTGGAGATTTAGCCGATACCCATGTTGCAGAACAGTTGGCGCCGAGGGTTGACTACAGTGTCCCGATTGAGGAAGTGCCATTGCTGGTTGTACAGTTAACCTGGTTCCCTTGTGGTTCCATCACGTTGGGACTTACCCTTTGTCGTGTCTTGGTTGATGGAACTTCTCTTGGCAGATTCATGAGCTTCTGGGCTAAACTGGCTAAGGTAGAGTCATTAGATTTGAGTTTGTTGCCATTTCTTGATCGAACTGTGTTGGATTCATGTAGGCTTAATTTGTCACCTCGTTTTGAACACCCTGAGTTTTCTCCACCACCCATTTGGGAAGGTAGCTCCAATGTTACAACAACATCACTTTATGCCACTGCTGTTTTCAAATTAACTAGAGTCCAAGCTGGGAAACTGAAGAAGAAAGCCAATAGTAACAACAATGTGCGAGGTGGTTATACTAGTTTTGAGGTTATGAGTGGTCATTTGTGGAGGTGTGTTTGCAAGGTGAGGTATGCAGGGAATGGGAACCAGCCAACAAGGCTAACAACATTGGTCAATTGTAGAAACCGGTTGAGTCCACCTCTTCCAAATGGTTACTTCGGGAACGCAACGTTTCCTACGGTGACACAAACTTGTTCCTTTGATGAGGTTATGCAGAGTCCTCTGAGTTATGCTGTTGGCAAAGTCAGGGGAGCGATTCAGAGGATGGATGATGAGTATGTGAGATCTGCTCTTGACTATTTGGCGGATCAGAAGGATATGAATTTGTTTAGGGACAAGTTTTACAACTCTGCTGGACAAAACCCAAATTTGTATGTGGTGTGTTGGACCAATTTTCCATTTTATGGAACTGATTTTGGGTGGGAAAAACCTGTGTGCTTGCTTCCAGGGAGCATTGGTTCTGATGGTAAGGCTTTCATTCTCAATGATGCAAGTGGGGATGGATTTGTTCTGGCTATTTCTTTGCAACTTTCCCATGTTGATGCTCTCAAGAAGCTGTTTTATGAGGATATAGAGTCTGCTGCTACTTCCAAATTGTGA 1365 0.4608 MVKIQCSYTVTPSETKPTPPPTLSLSHCDQLKLPNHGSQIYLYTPSTTTTEPPPPLSISIHTLRTSLSKALTHYYPFAGRLHWIEAGRMELLCNSKGVHLLGATSDVPFDDFGDLADTHVAEQLAPRVDYSVPIEEVPLLVVQLTWFPCGSITLGLTLCRVLVDGTSLGRFMSFWAKLAKVESLDLSLLPFLDRTVLDSCRLNLSPRFEHPEFSPPPIWEGSSNVTTTSLYATAVFKLTRVQAGKLKKKANSNNNVRGGYTSFEVMSGHLWRCVCKVRYAGNGNQPTRLTTLVNCRNRLSPPLPNGYFGNATFPTVTQTCSFDEVMQSPLSYAVGKVRGAIQRMDDEYVRSALDYLADQKDMNLFRDKFYNSAGQNPNLYVVCWTNFPFYGTDFGWEKPVCLLPGSIGSDGKAFILNDASGDGFVLAISLQLSHVDALKKLFYEDIESAATSKL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1572 454 PANTHER SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE-RELATED 4 448 - -
Lja1g1572 454 Gene3D - 220 445 IPR023213 -
Lja1g1572 454 Gene3D - 1 215 IPR023213 -
Lja1g1572 454 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 448 - -
Lja1g1572 454 Pfam Transferase family 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1572 Lja-Chr1 17086548 17092526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1572 2 444 Monolignol Biosynthesis Gene Families AT5G48930 36.504 1.38e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1572 K13065 - gmx:100819383 510.375