Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1563 ATGGAGGAGGAAGAAGTGAATTCGAGGCACAAAATCCGCAACATCTGCATCCTCGCACATGTGGACCACGGCAAGACCACTCTCGCCGATCAGCTCATCGCCGTCGCGAGCGGCGGCATGGTCCACCCCAAGGTAGCGGGTCGGGTCCGCTTCATGGACTACCTTGACGAGGAACAGCGCCGAGCCATCACCATGAAAAGCTCCTCCATCGCCCTCCGCTACAACCACCACACCGTCAACCTCATCGACTCCCCTGGCCATATCGACTTCTGCGGCGAGGTATCCACCGCCGCGCGTCTCTCCGACGGCGCACTCCTCCTCGTTGACGCCGTCGAGGGCGTCCACATCCAGACCCACGCCGTTCTCCGCCAGTGCTGGATCGAGAAACTCTCGCCTTGCCTTGTTCTCAACAAGATTGATCGGTTAATCACCGAGCTCAAGCTTACTCCCTCTGAGGCTTACTCTCGGTTGTTGAGGATTGTTCATGAAGTTAACGGTATCCTCAGTGCGTATAAATCCGAGAAGTACCTCTCCGATGTTGACTCCCTCATTGCCAGCAGCAGCAGTGCCGCCTCCGGCGGCGAGTTTGTCGAGGATGACGACAATGAAGACGTATTTCAGCCACAGAAGGGGAATGTGGTGTTCGCGTGCGCGCTGGATGGTTGGGGTTTTGGGGTTCATGAGTTTGCGGAGTTCTATGCGTCTAAGCTTGGGGCTAGTGTGGGGGCATTGCAGAAAGCGTTGTGGGGGCCGAGGTATTTCAATCCGAAGACGAAGATGATTGTTGGGAAGAAAGGGATTGGTGGTGGTGGTGGTAAGGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCCTTGTGGCAAGTTTACCAGGGTGCTCTTGAGGGGGATGGAGAGTTGGTTGGTAAGGTTATAAAGGCCTTTAATTTGCAGGTTCCGGCGAGAGAGTTGCAGCATAGGGATCCTAAGGTTGTGCTTCAGGCGGTTATGAGCCGTTGGCTTCCTCTCTCGGATGCCATTTTGTCAATGGTGGTTAAGTGTATGCCAGACCCTGTGGCCGCACAGGCATTTAGGATTTCACGGCTGATTCCTGAGCGTGAGGTGGCTGCTGGGGATGGGGTTGACCCGAGGGTGGTGGAGGAGGCGAAGCTCGTGAGGAAATCTGTGGAGGGGTGTGATTGGGGACCTGAGGTTCCTTGTGTTGCCTTTGTGGCCAAGATGTTTGCTGTCCCTCTTAAAATGATTCCTCTCCAAGGTGGGGAGATTGTGAGTGATGAAGGAGAGGGTGATTCTGATGAGTGTTTCTTGGCGTTTGCTAGGATCTTCAGTGGGGTTTTGTCTGTGGGGCAGAGAGTTTTTGTGCTTTCTGCTTTGTATGACCCCCTAAAAGGGGAGTCAATGCAAAAACATATTCAGGAGGCTGAATTGAAATCCATGTATCTGATGATGGGACAAGGGTTGAAAGTAGTGACATCGGCCAAAGCAGGGGATGTTGTTGCTATTCGAGGCCTTGGCCAGCATATATTGAAAAGTGCTACCCTTTCTTCTACTAGGAACTGTTTGCCTTTTTCAAGTATGGCATTCCAAGTTGCCCCAACATTGAGAGTTGCAATTGAGCCATCTGACCCTGCAGAAATGGGTTTGCTGCTCAAAGGATTGAGACTTCTGAATCGAGCTGATCCGTTTGTTGAGGTCACAGTGTCTGGAAGAGGAGAGCATGTTCTCGCTGCAGCTGGTGAAGTTCATCTAGAGAGATGCATAAAGGACTTGAAGGAGAGATTTGCCAAAATAAGCTTGGAAGTCTCACCGCCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTGTCCAATGTAATGGAAAATTTGAAGGCTCTTAGTAGGAGCTCAGACTATGTTGAGAAAACAACCCCCAATGGAAGATGTATTATTCGTGTGCAGGTGATGAAACTTTTACCTTCGCTTACAAAGGTGCTTGACGAAAGCTCTGATTTACTTGGAGATGTCATTGGAATAAAGTCCGGACAGACAGTAAAAAATATGGAGACCCGAAGACCTAGTATTCTTGAGGATGATAATTCAGCTGAAGTGCTAAAGAAACGCATAATAGATGCAGTAGAGAGTGATATATTGAGTAGGAATGAGAATGACAAGGACCATGCCGATAAATGTAAATTGAAGTGGCTAAAACTTTTGAGTAGGATATGGGCCCTTGGACCAAGGCAGATTGGTGCTAACATTCTCTTCACTCCTGATATTAAAGCAGAAAGTACTGATAACTCTGTTCTCTTACGAGGTTGTTCTCATGTATCTGAAAGGTTGGGCTTTGTGGCAGATTCTAGTAACAGTAACTCAGTTTCTGAGACATCTTTAGATGACAACGAAGCTTGGTACATGGATGCTGAGCGTCTTGAGAGTAGTGTTATAACTGGGTTCCAACTAGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTTGTTGAGGCACGTATATCTCCATTTACAGGGCAGTATGATGAATCTGAAACACACCAGCAATCTGAGCAGTATGGCATCTTTGCGGGGCAGGTAATTACAACTGTCAAAGATGCTTGTAGAGCAGCTGTACTTCAGAATAAGCCACGGCTTGTGGAAGCAATGTACTTCTGTGAGTTGAACACGTCTACTGAATATTTGGGTCCCATGTATGCTGTGCTTTCCCGAAGACGGGCCCGCGTTTTGAAGGAAGAGATGCAGGAAGGTTCATCTATCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTACCTGAAGATCCTTTCTTTGTACCCAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCCTCCAAATACTGCGAGAAAGTTAATGAACGCAGTCAGACGATGTAAGGGCCTTCCAGTAGAGGAGAAGGTAGTACAGCATGGAACCAAGCAGAGGACACGGGCTCGTAAAGTCTGA 3072 0.4886 MEEEEVNSRHKIRNICILAHVDHGKTTLADQLIAVASGGMVHPKVAGRVRFMDYLDEEQRRAITMKSSSIALRYNHHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIEKLSPCLVLNKIDRLITELKLTPSEAYSRLLRIVHEVNGILSAYKSEKYLSDVDSLIASSSSAASGGEFVEDDDNEDVFQPQKGNVVFACALDGWGFGVHEFAEFYASKLGASVGALQKALWGPRYFNPKTKMIVGKKGIGGGGGKAKPMFVQFVLEPLWQVYQGALEGDGELVGKVIKAFNLQVPARELQHRDPKVVLQAVMSRWLPLSDAILSMVVKCMPDPVAAQAFRISRLIPEREVAAGDGVDPRVVEEAKLVRKSVEGCDWGPEVPCVAFVAKMFAVPLKMIPLQGGEIVSDEGEGDSDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGESMQKHIQEAELKSMYLMMGQGLKVVTSAKAGDVVAIRGLGQHILKSATLSSTRNCLPFSSMAFQVAPTLRVAIEPSDPAEMGLLLKGLRLLNRADPFVEVTVSGRGEHVLAAAGEVHLERCIKDLKERFAKISLEVSPPLVSYKETIEGEVSNVMENLKALSRSSDYVEKTTPNGRCIIRVQVMKLLPSLTKVLDESSDLLGDVIGIKSGQTVKNMETRRPSILEDDNSAEVLKKRIIDAVESDILSRNENDKDHADKCKLKWLKLLSRIWALGPRQIGANILFTPDIKAESTDNSVLLRGCSHVSERLGFVADSSNSNSVSETSLDDNEAWYMDAERLESSVITGFQLATSAGPLCDEPMWGLAFVVEARISPFTGQYDESETHQQSEQYGIFAGQVITTVKDACRAAVLQNKPRLVEAMYFCELNTSTEYLGPMYAVLSRRRARVLKEEMQEGSSIFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVPPNTARKLMNAVRRCKGLPVEEKVVQHGTKQRTRARKV* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1563 1023 Pfam Elongation factor Tu domain 2 436 514 IPR004161 GO:0005525
Lja1g1563 1023 SMART EFG_C_a 881 970 IPR000640 -
Lja1g1563 1023 Gene3D Translation factors 351 529 - -
Lja1g1563 1023 Pfam Elongation factor G C-terminus 882 966 IPR000640 -
Lja1g1563 1023 PRINTS GTP-binding elongation factor signature 132 141 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 PRINTS GTP-binding elongation factor signature 96 107 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 PRINTS GTP-binding elongation factor signature 60 68 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 PRINTS GTP-binding elongation factor signature 80 90 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 PRINTS GTP-binding elongation factor signature 14 27 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 SUPERFAMILY Ribosomal protein S5 domain 2-like 606 883 IPR020568 -
Lja1g1563 1023 CDD aeEF2_snRNP_like_IV 603 888 - -
Lja1g1563 1023 CDD eEF2_snRNP_like_C 884 963 - -
Lja1g1563 1023 CDD EF2 13 234 - -
Lja1g1563 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 349 IPR027417 -
Lja1g1563 1023 SUPERFAMILY Translation proteins 392 526 IPR009000 -
Lja1g1563 1023 Gene3D Yeast translation eEF2 (G' domain) 226 334 - -
Lja1g1563 1023 Gene3D Elongation Factor G (Translational Gtpase), domain 3 531 607 - -
Lja1g1563 1023 TIGRFAM small_GTP: small GTP-binding protein domain 11 143 IPR005225 GO:0005525
Lja1g1563 1023 Gene3D - 627 878 IPR014721 -
Lja1g1563 1023 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 3 1022 - -
Lja1g1563 1023 SUPERFAMILY EF-G C-terminal domain-like 530 604 IPR035647 -
Lja1g1563 1023 Pfam Elongation factor Tu GTP binding domain 11 343 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 PANTHER - 3 1022 - -
Lja1g1563 1023 Gene3D - 880 1014 - -
Lja1g1563 1023 Gene3D - 4 213 IPR027417 -
Lja1g1563 1023 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 10 241 IPR000795 GO:0003924|GO:0005525
Lja1g1563 1023 CDD EF2_II 399 517 - -
Lja1g1563 1023 SUPERFAMILY EF-G C-terminal domain-like 884 982 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1563 Lja-Chr1 16978869 16984799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1563 11 1023 Eukaryotic Initiation Factors Gene Family AT3G22980 70.244 0.0 1453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1563 K14536 - pvu:PHAVU_003G003900g 1657.11