Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1547 ATGACAACTAAAGGCCATGCTTCTCTGTTTCTGGTATTGGTTACCGTTTTACTTTCTATCTATCACTCAGAGCAACTTCAATCCTCCAACTCTCATACCCTTCTAAGAATTCAACAGCTATTGGACTTTCCTACTGCTTTAAGCAAGTGGAACAACAAGACAGACTTTTGCAGCACAGATTCAAACCCTTCCCTCACTGTAGTGTGCTATGAAAACACCATAACACAACTTCACATTATAGGTGAAAGAAGAGCTCCAATTCAAAATTTCTCAATAGACACCTTTGTCACAACACTGGTGAAACTTCCTAGTTTGAAAGTTCTTACATTGGTTTATCTTGGCATATGGGGTCCATTGCCTGGTAAAATCGCTCGTCTTTCGTCGCTGGAAATAGTTAATGTGAGTTCAAATTATCTCCATGGTTCAATCCCTCAGGAAATTTCATTGATGTCAAATCTTCAAACACTGATCCTTGACAACAACAGGTTTTCTGGACAGATTCCTGATTGGTTTGATTCACTTCAGGCCTTATCTGTGTTGAGTTTGAAACACAATCTGTTCAATGGAACTCTACCAAAATCTCTTGGTAGTTTGGAGAGTTTGAGAATTCTTTCACTTTCACACAATCACTTCTATGGAGAAGTACCTGATTTGAGCCTTTTGACAAATCTTCAAGTGCTGGAATTGGATGGAAATGCATTTGGACCTGAGTTTCCTAACCTTGGTCACAAGCTGGTTGCTCTAGTGCTAAGAGATAACAGGTTTAGATCTGGTATCCCTGCTGAATTGAGCTCATATTTTCAGCTTCAGAGATTGGATATCTCAGCAAACACATTTGTGGGGCCATTTCAGACATCACTGTTGTCTCTTCCTTCTATCACTTACCTGAACATTTCTGGGAACAAATTAACTGGGATGCTCTTCGAGAATCTGTCTTGCAATTCTGAGCTTCAAGTAGTTGACTTGTCTTCAAATCTTTTAACTGGGAGCATACCTAGATGTTTAGTGTCAAATTTTTCCAGTGATAGGATTGTTCTGTATGCTAGAAATTGTTTAGAGGAAATGAACCAAGATCAGCAACCACCACCCTTTTGCCACACTGAAGCCTTAGCTGTGGGAGTGTTACCTGAGAGAAAGAGTCAACACAAACAAGTATCCAAGGTAGTTCTTTCCCTTGGCATAGTAGGTGGGGTTCTTGGAGGAATAGCACTTGTTTTGCTGATTTTCTTTGTTGTTAGAAGAGGAAATGCCAGAAGCAAAATGAAGAATCCTCCAACAAGATTAATATCCGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTTTCTGATGCCAGGTATATATCTCAAACAAAAAAGATGGGAGCAGTTGGTCTGCCAAATTATAGAAGTTTCTCATTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACTCAAATTCTTTAATGGTTGAAGATTCTTATGGGCAGATGTACAGAGGTCAGCTGAAGAATGGCTCACTCGTGACTATTAGGCGTATACAAATCAAGAAACGATATAGCACTCAAAACTTCATGCACCACATAGAGCTGATATCAAAACTTAGGCATCGTCATCTAGTCAGCGCTCTTGGACACTGCTTTGAATGTTCTTTAGATGATTCAAGTGTCAGCAAAATATTTCTTGTCTTTGAATATGTGCCGAATGGCACTCTCAGGAGCTGGATCTCAGATGGGCATGTTAGAAAATCCCTGAATTGGACCCAACGCATAGGAGCTGCAATTGGAGTAGCAAAGGGAATCCAATTTTTGCATACAGGGATTGTTCCTGGTTTATATTCCAACAACATCACAATAGAAAATGTTTTGTTGGACCAAAATCTTGTTGTGAAAATCAGCAGTTATAACCTGCCTTTGCTATCTAACATGGGAAAGGTTCGGCATGGAAATTCTTCGAACGGATTAAAACATTCTAGCATCAATAAAAGTGTAAAGCATGAAGATAAGTCTGATATATATGACTTTGGAGTAATACTACTGGAACTCATTCTGGGAAGGACAATAAAGGCAACCAAGGATGCAGATGCTTTTAAGGATCTGCTGCAAGCAAGCATAGGAGCTGATGATGAAGCTCGAAGAAGCGTTGTTGATCCGGAAGTTCGCAAGTTAAGCTTGGATCAATCATTGAGGACAATGATGGAGATTTGTGTGAGGTGCTTGGCTAAAGAGCCAGCAAATAGGCCTTCTGTAGAGGATGTTTTGTGGAATTTACAGTTTGCTGCTCAAGTTCAAGATGCATGGAGAGGGGATTCTCAGAGTAGTGAGGGTTCACCCAGCTCGCCTTTAGAGCCTCGAAAACTAGCCTTCCATTATTTTCATTGTCTGGAAAGAACCAGAAAAATTCAGGAACAAAAGACAATTTTACTCTGA 2409 0.4014 MTTKGHASLFLVLVTVLLSIYHSEQLQSSNSHTLLRIQQLLDFPTALSKWNNKTDFCSTDSNPSLTVVCYENTITQLHIIGERRAPIQNFSIDTFVTTLVKLPSLKVLTLVYLGIWGPLPGKIARLSSLEIVNVSSNYLHGSIPQEISLMSNLQTLILDNNRFSGQIPDWFDSLQALSVLSLKHNLFNGTLPKSLGSLESLRILSLSHNHFYGEVPDLSLLTNLQVLELDGNAFGPEFPNLGHKLVALVLRDNRFRSGIPAELSSYFQLQRLDISANTFVGPFQTSLLSLPSITYLNISGNKLTGMLFENLSCNSELQVVDLSSNLLTGSIPRCLVSNFSSDRIVLYARNCLEEMNQDQQPPPFCHTEALAVGVLPERKSQHKQVSKVVLSLGIVGGVLGGIALVLLIFFVVRRGNARSKMKNPPTRLISENAASGYTSKLLSDARYISQTKKMGAVGLPNYRSFSLEEIEAATNYFDSNSLMVEDSYGQMYRGQLKNGSLVTIRRIQIKKRYSTQNFMHHIELISKLRHRHLVSALGHCFECSLDDSSVSKIFLVFEYVPNGTLRSWISDGHVRKSLNWTQRIGAAIGVAKGIQFLHTGIVPGLYSNNITIENVLLDQNLVVKISSYNLPLLSNMGKVRHGNSSNGLKHSSINKSVKHEDKSDIYDFGVILLELILGRTIKATKDADAFKDLLQASIGADDEARRSVVDPEVRKLSLDQSLRTMMEICVRCLAKEPANRPSVEDVLWNLQFAAQVQDAWRGDSQSSEGSPSSPLEPRKLAFHYFHCLERTRKIQEQKTILL* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1547 802 SUPERFAMILY L domain-like 99 352 - -
Lja1g1547 802 Pfam Leucine rich repeat 151 211 IPR001611 GO:0005515
Lja1g1547 802 Gene3D Transferase(Phosphotransferase) domain 1 560 768 - -
Lja1g1547 802 Pfam Protein tyrosine and serine/threonine kinase 486 747 IPR001245 GO:0004672|GO:0006468
Lja1g1547 802 ProSiteProfiles Protein kinase domain profile. 477 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1547 802 SUPERFAMILY Protein kinase-like (PK-like) 459 752 IPR011009 -
Lja1g1547 802 ProSiteProfiles Leucine-rich repeat profile. 200 222 IPR001611 GO:0005515
Lja1g1547 802 Gene3D Ribonuclease Inhibitor 245 381 IPR032675 -
Lja1g1547 802 Gene3D Ribonuclease Inhibitor 27 244 IPR032675 -
Lja1g1547 802 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 774 - -
Lja1g1547 802 Gene3D Phosphorylase Kinase; domain 1 439 559 - -
Lja1g1547 802 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 10 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1547 Lja-Chr1 16763042 16770602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1547 43 772 Miscellaneous Gene Families AT3G03770 62.364 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Lja1g1547 PK_Tyr_Ser-Thr 4.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1547 - - lja:Lj1g3v3977170.1 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1547 1 16763042 16770602 Lja1g1547 1 16763042 16770602 ECH