Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1545 ATGGCTGAGCCACAAGTTAGTAACAGTAGTGACCATGCCACTTCTTCTAGTTCTGGAGCTAGGCGTAAAGGCACGGTTTCAAAGCGTGGTGGCATGACAATAACAACAACAACAGCTCAGGGAGGTGCTCCATGTGGGGCCTGCAAGTTCCTGAGGAGGAAGTGTATCAATGGGTGCGTGTTTGCACCTTACTTTGGTTCAGACCAGGGTGCGGCACGGTTTGCGGTTGTGCACAAGGTGTTTGGTGCGAGCAATGTGTCGAAGCTACTGCTGCATGTTCCGGTGAACCGCCGCCATGAGGCGGTTGCTACTATATCGTACGAGGCTCAGGCGAGGTTGTCTGATCCTGTTTATGGTTGTGTGTCCACCATTCTTGCTTTGCAGCAACAGGTGGCATCTTTGCAAGGGGAGCTTTCTATGGTGCAAACTCAGCTGATGAATAGCAGGTTTGCATATGCAAGTGTTCTTCAGCAACAACAGCAACCAAACATCAATGTAGCAATGCACCCAGCGTACTCCAACAACTCATCTGCCTCCACCAACATTATGAACATGAGCTGCTTCAACCCTGCAGGATTTGACCTTTCAATGGAGACAGCAGCACCCTCCTCACACAGCTTCGAGCCTCTTCAACTCTCTCACTTGTCCCATGATGAGGAAGATGATTAA 669 0.5007 MAEPQVSNSSDHATSSSSGARRKGTVSKRGGMTITTTTAQGGAPCGACKFLRRKCINGCVFAPYFGSDQGAARFAVVHKVFGASNVSKLLLHVPVNRRHEAVATISYEAQARLSDPVYGCVSTILALQQQVASLQGELSMVQTQLMNSRFAYASVLQQQQQPNINVAMHPAYSNNSSASTNIMNMSCFNPAGFDLSMETAAPSSHSFEPLQLSHLSHDEEDD* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1545 222 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1545 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 12 210 - -
Lja1g1545 222 ProSiteProfiles LOB domain profile. 43 145 IPR004883 -
Lja1g1545 222 Pfam Lateral organ boundaries (LOB) domain 44 142 IPR004883 -
Lja1g1545 222 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 210 - -
Lja1g1545 222 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1545 Lja-Chr1 16745848 16746780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1545 17 222 AS2 family AT3G03760 55.085 3.21e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja1g1545 LOB 1.7e-37 No_clan