Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1540 ATGGCAGGAGGAAGCAGGAACATGAGCATTCTGACATCTCGTACAAGCTCCCGGTCGGTGACGGAGACGGTGAACGGTTCTCACAAGTTCGTGATCAAGGGTTACTCTCTGGCGAAGGGTATGGGAGTTGGCAAGCACATCGCCAGCGAAACTTTCACCGTCGGAGGGTACCAGTGGGCAATCTACTTCTACCCCGACGGCAAGAACCCCGAGGACAATTCCGCCTATGTCTCCGTCTTCATCGCGCTCGCCTCCGAGGGTACCGATGTTCGCGCTCTTTTCGAGCTCACCTTGCTCGATCAGAGCCCCAATGCTAAGCATAAGGTCCATAGCCACTTCGATCGCTCGCTCGAGAGCGGTCCCTATACTCTCAAGTACCGTGGGAGCATGTGGGGGTACAAGCGTTTTTTCAAACGGGCTCAGCTTGAGGCATCAACCTTCCTGAAGGATGACTGCTTGAAGATAAACTGCACTGTTGGTGTTGTGGTGTCATCCATAGATTGTTCAAAGTTGAACATTATACAGGTTCCTGACTCTGATGCTGGAGAGCATTATGGTATGCTGTTGGAGAGCGAGGAAGGATCTGATGTTACTTTCTGTGTTGGCGGAGAAAGGTTTCGTGCACATAAGCTTGTTTTGGCTACCCGGTCATCTGCGTTTGAAACTGAGTTTTTCAATGGGATGGAGGAAGATGATCGTGACATAGTCATTGATGACATGGAACCTAAGGTTTTCAAGGCGTTGCTTCATTTTATTTATAGAGACTCTCTTATAGAAGATGAAGAGCTCTTTATGTCGCGTTCATCATTCTGGCCTTCAGTATCTGAAACATTTGCAGCAAAATTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGTGAGTCTGTAATTTGCAAAGACATATCAATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTCATCATGCTACAGAACTGAAGTCCATCTGTCTACAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCAGATGGTTTTGAGTATCTCAAGGAAAACTGTCCATTACTGCAATCGGAACTGCTTAAAACGGTGGCTGGATGCGAGGAGGAATCGAGTGGAGAAGGAAAATGTAGAAGCGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATCGTAGTGTGAGACAACAAACCTGGGAAAATGGAGCTGAAAGAAGTCAAAGCTTATGGGTTAACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGAGCAAGAAGCTTGA 1293 0.4671 MAGGSRNMSILTSRTSSRSVTETVNGSHKFVIKGYSLAKGMGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSPNAKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNIIQVPDSDAGEHYGMLLESEEGSDVTFCVGGERFRAHKLVLATRSSAFETEFFNGMEEDDRDIVIDDMEPKVFKALLHFIYRDSLIEDEELFMSRSSFWPSVSETFAAKLLAAAEKYGLPRLKLMCESVICKDISIDSVAYILALADRHHATELKSICLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEESSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGAERSQSLWVNLSDGVNNNDRSPEQEA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1540 430 CDD BACK_AtBPM-like 303 364 IPR034090 -
Lja1g1540 430 ProSiteProfiles MATH/TRAF domain profile. 25 159 IPR002083 GO:0005515
Lja1g1540 430 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 11 379 - -
Lja1g1540 430 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 11 379 IPR045005 GO:0016567
Lja1g1540 430 Gene3D Potassium Channel Kv1.1; Chain A 171 300 IPR011333 -
Lja1g1540 430 Gene3D - 305 379 - -
Lja1g1540 430 CDD BTB_POZ_BPM_plant 182 303 - -
Lja1g1540 430 CDD MATH 26 159 IPR002083 GO:0005515
Lja1g1540 430 MobiDBLite consensus disorder prediction 386 423 - -
Lja1g1540 430 Pfam BTB/POZ domain 188 304 IPR000210 GO:0005515
Lja1g1540 430 SUPERFAMILY TRAF domain-like 22 161 - -
Lja1g1540 430 SMART BTB_4 195 306 IPR000210 GO:0005515
Lja1g1540 430 ProSiteProfiles BTB domain profile. 195 261 IPR000210 GO:0005515
Lja1g1540 430 SMART math_3 30 142 IPR002083 GO:0005515
Lja1g1540 430 MobiDBLite consensus disorder prediction 386 430 - -
Lja1g1540 430 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 24 163 IPR008974 GO:0005515
Lja1g1540 430 SUPERFAMILY POZ domain 174 305 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1540 Lja-Chr1 16689353 16696145 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1540 BTB 6.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1540 K10523 - gmx:100809683 773.467