Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1537 ATGTCTGCTTCAATTTGGACCTGCATTCACACAATGCCGAGCAAATCTCAGGTCATTACATGCAAAGCTGCAATATGCTGGGGGCTAGGAGAGCCTGTGACAGTGGAAGAGATACAAGTAGATCCTCCAAAAGCAACTGAAGTTCGAGTTAAGATGCTTTGTGCAAGTATCTGCCACACAGACATCACAAGCATCCATGGATTCCCACATGGTATATTTCCTTTAGCACTTGGACATGAAGGAGTTGGGATTGTAGAAAGTGTTGGTGATCAAGTGACAAATCTAAAAGAAGGGGACATGATAATTCCAACATACATAGGAGAGTGCCAAGAATGTGAGAATTGTGTTTCAGGAGAAACCAATTTGTGTATGAAATACCCTATAGCATTGAGTGGCATGATGCCAGACAACACTTCAAGGATGTCCATCCGAGGCCAGAGGCTATCTCATGTTTTTAGTTGTGCTACATGGTCAGAGTACATGGTTATTGATGCAAGCTACCCTCTCAAAGTTGATCCAACCATTGATCAAGCCCATGCTAGCTTCATCTCATGTGGGTTTTCAACTGGTTTTGGAGCTGCTTGGAAGGAAGCCAAGGTTAAAAGTGGATCAAGTGTAGCTGTTTTTGGCCTTGGAACTGTTGGATTAGGGGCTATAAGTGGAGCAAAGATGCAGGGGGCAACTAAGATAATTGGGATTGACAAAAATTACATGAGGAGAGAAAAAGGAGAAGCCTTTGGAATGACACACTTCATAAATCCTGGTGATTCTGGTAAATCTCTTTCAGAATTGGTCAAGGAACTGAGTGGTGGAGTGGGTGTGGATTATTCCATTGAGTGCACTGGAGCTCCCCCTTTACTTACTGAATCTGTGGCAGCCACAAAAGTGGGAACAGGTAAGACAATAGCAGTTGGGATGGCACCTGAGCCTGTTGTGCCGTTTGGACTTCTTGCCCTTTTGTTTGGTAGAACTTTGAAAGGTTCAGCATTTGGAGGGATAAAAACTACAACAGACCTGTCCATCATAGCTAACAAATGTCTAAAACAGGAATTCCCACTTCAAGAGTTGTTCACCCACGAAGTCCCATTGTCTGATGTAGACAAAGCATTTGAGCTATTGAAACAGCCTGACTGTGTCAAAATTATCATCAAGATGTGA 1158 0.4318 MSASIWTCIHTMPSKSQVITCKAAICWGLGEPVTVEEIQVDPPKATEVRVKMLCASICHTDITSIHGFPHGIFPLALGHEGVGIVESVGDQVTNLKEGDMIIPTYIGECQECENCVSGETNLCMKYPIALSGMMPDNTSRMSIRGQRLSHVFSCATWSEYMVIDASYPLKVDPTIDQAHASFISCGFSTGFGAAWKEAKVKSGSSVAVFGLGTVGLGAISGAKMQGATKIIGIDKNYMRREKGEAFGMTHFINPGDSGKSLSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTGKTIAVGMAPEPVVPFGLLALLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFTHEVPLSDVDKAFELLKQPDCVKIIIKM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1537 385 PANTHER ALCOHOL DEHYDROGENASE-RELATED 16 384 - -
Lja1g1537 385 CDD liver_alcohol_DH_like 19 384 - -
Lja1g1537 385 Gene3D - 190 328 - -
Lja1g1537 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Lja1g1537 385 Pfam Alcohol dehydrogenase GroES-like domain 46 170 IPR013154 -
Lja1g1537 385 SMART PKS_ER_names_mod 28 383 IPR020843 GO:0016491
Lja1g1537 385 Pfam Zinc-binding dehydrogenase 214 334 IPR013149 -
Lja1g1537 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 344 IPR036291 -
Lja1g1537 385 PANTHER ALCOHOL DEHYDROGENASE 16 384 - -
Lja1g1537 385 Gene3D - 24 380 - -
Lja1g1537 385 SUPERFAMILY GroES-like 15 201 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1537 Lja-Chr1 16667147 16669770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1537 46 377 Monolignol Biosynthesis Gene Families AT2G21730 28.024 3.21e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1537 K00121 - gmx:100798341 633.254