Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1522 ATGTGGTTGTGGGTTTCGATTCGAATATGGTTGTGGGTTTCGATTCGTGTGAGGAATCAATTTGGGTTAGGGTTGTGGGTATCGATTTCGGGATTTGAGGTTGTGGGTATCGAATTGGCTATGGTTGTGGGTTTGGATTTGGGTGAGGTTTCGATTTGGGTTAGGGTTGTGTGTATCGATTTGGGTATGGTTGTGGGTTTCGATTTGGGTGAGTTTTCGATTGGGGTTGGGGATGTGGGTTTCGTTTTGTGGTTGTGGGTATCGAATTGGGTTTGGTTGGGTATGGTTGTGGGTTTTGATTTGGGTATTCTTGTGTTAATTTGTGTACATTCGCCTATTGGATTGGAGGTATTCATGGAAGATTCAAAAATTCCCAGTTGGTGTTCAGATGAAGGTTTTTCATCTGTTGGTGAAGGTAATAACACATTTGTTGCTGGTATTCTTCAATCACCCTCACCGACCATGTCCGAGTCAATTGGTGAGGATGTATCGGGTTTAGGAGTTGCTGTGAACAGTATGGATGATGTTGCTAACATCTTGTGGGAATGTATCAACGAGACTGAGTTGAAGAAATATCATTTTCTTAATCGGCAGGTTGCATATGACTTCTACAACTTGTATGCTAGAGTGAAGGGCTTCTCAGTACGAAAAAGCAAGGTTTTGAGAAACATCAAAAAAGTAATTGTGCGCCAAGACTTTGTGTGTTTCAAGGAAGGTTTTCGTGAAGATAAAAATAGAAATAGGGAAAATCGTTTGCGGGAAACAAAGGTAGAAACAAGATGTGGATGCCAAGCAAAAATGAGGATTCGATTGGTGGCTGAAAGTGGTAGGTGGCATGTTGGGATGTTTGTAGATGATCACAATCATGCAATGCTAGAAGGAAAGCAATCTTCGATGTTACCAGCACATCGGAAGTTGGAAGAAGGTGATATAGGTGGGTTGATGAGTATGCGAAGGGCTGGTATAAGCACAACCGAAATATATAATTTAATTGCTGACCAATCAGGTGGTTTTGATAAGACAAATTTTTTGAAGGTGGACTTGTTGAATCAAATGACGAAGCAGAAACAGAAGGAGCAGTGTGATGCAAAAGCTGTTCTGGTGTATTTGAAGGGTCTTGCATCTAGTGATGCCGACATGTTCTGGAGCAAAGGATGTGGTGCTACCTCTACTGGAATCAAGGGGAAAAGAAAGTGCACTGTCTGTAAGATGGAAGGTCACAACAGAACAACATGCCCTCAGAACAAACGTGTCAAAGTAACAGATGGATCTTCTAATTTGGTGACTGATGAAGACGCTGGTGATGCTTAG 1311 0.4195 MWLWVSIRIWLWVSIRVRNQFGLGLWVSISGFEVVGIELAMVVGLDLGEVSIWVRVVCIDLGMVVGFDLGEFSIGVGDVGFVLWLWVSNWVWLGMVVGFDLGILVLICVHSPIGLEVFMEDSKIPSWCSDEGFSSVGEGNNTFVAGILQSPSPTMSESIGEDVSGLGVAVNSMDDVANILWECINETELKKYHFLNRQVAYDFYNLYARVKGFSVRKSKVLRNIKKVIVRQDFVCFKEGFREDKNRNRENRLRETKVETRCGCQAKMRIRLVAESGRWHVGMFVDDHNHAMLEGKQSSMLPAHRKLEEGDIGGLMSMRRAGISTTEIYNLIADQSGGFDKTNFLKVDLLNQMTKQKQKEQCDAKAVLVYLKGLASSDADMFWSKGCGATSTGIKGKRKCTVCKMEGHNRTTCPQNKRVKVTDGSSNLVTDEDAGDA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1522 436 MobiDBLite consensus disorder prediction 415 436 - -
Lja1g1522 436 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 185 327 - -
Lja1g1522 436 Pfam FAR1 DNA-binding domain 202 292 IPR004330 -
Lja1g1522 436 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 185 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1522 Lja-Chr1 16498866 16501826 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g1522 FAR1 9.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1522 - - ccaj:109791042 199.134