Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1521 ATGGAAGATCATCAGGGGCAGAAGGACCCCAACACCAAAAACAACAACGCTCCAAGCCCCCACCATGGCTGCAGCTCCGAGAAGAGTGAACCGGTTAGGTCAAGGTGGACTCCAAAGCCAGAACAAATCCTCATCCTTGAGTCCATCTTCAACAGCGGCATGGTGAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTCCTTGAGAAATTCGGCACCGTCGGTGACGCCAACGTGTTTTACTGGTTCCAGAACCGCCGCTCCCGATCTCGCCGCCGCCAGCGCCAGATGCAAGCCTCCCTTGTTGAGCAGAGAAACAACCTGCAGAACAACAACATGCAGCAGCAGCTTCTTGAAGGTGCACCAGCTGCAGCAAGTGCTATTCCTTGTGATCAAGCTCAGGGTCATCCCAACCTTGCTGCTGCAATTTCCATGGGTTTTGGTTCTTCCTCTTCTCCATCTTATCTTGCTGGTTCCTCTTCATCTTGTGGTGTTGGCCAACAAGGCTTGGATGGTTACTTCTCACTTTCTCCTCAAATGGGTTACCCGGGAATTGATCAAAGTTTTGCTGCATCATCTCTTGTGTATCCTCCTGTTGCTCCTAACTTGAACTACCAATCTGGATATGAGGGTTCTAATGTTTCAGGATACATCACGGTGTTTATCAATGGGATTGCAACAGAGCTTCAAGGGGGGCTAATAGACATGAAAACTATGTTTGGGGAAGATGTGATGTTAGTTCATTCCTCTGGAGTTCCTGTTCCCACAAATGAATTTGGGTTCTTGATGCAAAGCTTGCAGCATGGTGAAAGCTACATTCTGGTCCCGAAGGCACCACAAGAATGA 849 0.4876 MEDHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMQASLVEQRNNLQNNNMQQQLLEGAPAAASAIPCDQAQGHPNLAAAISMGFGSSSSPSYLAGSSSSCGVGQQGLDGYFSLSPQMGYPGIDQSFAASSLVYPPVAPNLNYQSGYEGSNVSGYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILVPKAPQE* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1521 282 SUPERFAMILY Homeodomain-like 28 100 IPR009057 -
Lja1g1521 282 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g1521 282 Pfam Homeodomain 33 93 IPR001356 GO:0003677
Lja1g1521 282 Gene3D - 33 101 - -
Lja1g1521 282 ProSiteProfiles 'Homeobox' domain profile. 29 94 IPR001356 GO:0003677
Lja1g1521 282 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 278 - -
Lja1g1521 282 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 278 IPR044558 GO:0003700|GO:0048830
Lja1g1521 282 SMART HOX_1 31 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1521 Lja-Chr1 16486971 16490271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1521 22 278 Wox Gene Family AT5G17810 48.375 1.14e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja1g1521 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1521 - - gmx:100791266 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1521 1 16486971 16490271 Lja1g1521 1 16486971 16490271 ECH