Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1520 ATGAATCCTCAGCACTTGATCAATGGTTGTGAAGGTTTCAGTAGTGGGGATCATAAGAGTTTCTTGATCCCTTCACTACCTGTTCCTTCTTCTCTTCTTGTTGGTTCCCAATCTCCTGTTCCTTTTCAGGTTTTGACACCCTCAATGTTCCAGGCCCAGGAAAACAGGGGAATAACAGAGAGAACCAACAATGAAGCTGAAAGGGATTTGGGGCTTGATAGCAAGAGCTTGTCTTTGAAACTAGGTGATGAAGTTGAAGCTCCAAAGGGCTCTGGTTCAGGGAAAATTGGGTATACTAAGCTTTGTTCTAGAGGACACTGGAGGCCAGCTGAAGATGCACAGCTTAAGGAGCTTGTTGCTCAGCTTGGTCCTCAAAATTGGAACTTGATTGCAGAGCATCTCCCAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTCAATCAGCTAGACCCAAGAATCAACAAGAGGGCATTTTCTGAGGAGGAAGAGGAGAGGCTCTTAGGTGCTCACACAATGTATGGTAACAAATGGGCTTTGATTGCTAGGCTTTTTCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTCATCATGGCTAGGAGGCACAGGGAGCATCCTGGTAGTGGTAACTACAGAAGGAAAAAGCCAGCTGTTGAAAAAATTCCAAAGGGTTTAGAATTGACCCTTTCAAACAATGCAGCAAGTGAATCAAAATCAACAATCTCAAGCACCATTGATGAATCTTCCTCAACTTGCACTAACCTCTTCCTCACTCCCCCTTCAGCAAAACTAATTCTTGGACTTAATCATAATCTGGGTCATGTTCAGAATCACCACCAAGGCTCTGGATCAGTCACGGGTCAATCTGGAGAGAGGGTAGTAGTGGGAACAGAGAATGTGAGTCTTGATAAGTTTTTTGGTGCTTGGAACAAGAAACCCATGGAGGTGGACCAGTCCAATTTTTCTGAATCAACAAATTCAGAAGTTTCAGTATCTGAGTCAGTTGCTGCTGCTGCTGCCAATAGGTCAAACTTTAACCTCTCAATTTCTGGAGAAAGCGGAAACGTGGGTGGTGAGAGGATTAACAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTGGTTCTTCTTCTTGA 1146 0.4415 MNPQHLINGCEGFSSGDHKSFLIPSLPVPSSLLVGSQSPVPFQVLTPSMFQAQENRGITERTNNEAERDLGLDSKSLSLKLGDEVEAPKGSGSGKIGYTKLCSRGHWRPAEDAQLKELVAQLGPQNWNLIAEHLPGRSGKSCRLRWFNQLDPRINKRAFSEEEEERLLGAHTMYGNKWALIARLFPGRTDNAVKNHWHVIMARRHREHPGSGNYRRKKPAVEKIPKGLELTLSNNAASESKSTISSTIDESSSTCTNLFLTPPSAKLILGLNHNLGHVQNHHQGSGSVTGQSGERVVVGTENVSLDKFFGAWNKKPMEVDQSNFSESTNSEVSVSESVAAAAANRSNFNLSISGESGNVGGERINNMPFIDFLGVGAGSSS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1520 381 SUPERFAMILY Homeodomain-like 104 197 IPR009057 -
Lja1g1520 381 Pfam Myb-like DNA-binding domain 156 199 IPR001005 -
Lja1g1520 381 Pfam Myb-like DNA-binding domain 104 150 IPR001005 -
Lja1g1520 381 Gene3D - 104 155 - -
Lja1g1520 381 CDD SANT 158 198 IPR001005 -
Lja1g1520 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 150 IPR017930 -
Lja1g1520 381 Gene3D - 157 225 - -
Lja1g1520 381 CDD SANT 107 148 IPR001005 -
Lja1g1520 381 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Lja1g1520 381 PANTHER MYB PROTEIN-RELATED 58 377 - -
Lja1g1520 381 SMART sant 155 203 IPR001005 -
Lja1g1520 381 SMART sant 103 152 IPR001005 -
Lja1g1520 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 205 IPR017930 -
Lja1g1520 381 ProSiteProfiles Myb-like domain profile. 104 150 IPR001005 -
Lja1g1520 381 PANTHER OS08G0435700 PROTEIN 58 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1520 Lja-Chr1 16476275 16477882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1520 94 265 MYB Transcription Factor Family AT5G17800 65.169 2.00e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g1520 Myb_DNA-binding 7.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1520 K09422 - gmx:100791795 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1520 1 16476275 16477882 Lja1g1520 1 16476275 16477882 ECH