Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1518 ATGCTGTCGAAGTTCAATACATCCCAGATGGTGGACATCTACGTCCAGGTTACCAGCGGTGAGTTCGATCCCCTTGGTCTGTCCTTGAAGAAGATCCAAGAAGACATCATGAAGGAGACCACCCTTCTTCCTTCAAGTCTCTTCCTCGACTCCCTACAACCAGAGGAAACACTAGAGAGGGACAGGAGGAAGACGAAGAACATCAAGCACAATGGAAACATCTCGCTCGACGACGTCGTCGTCGAGATCGTGAGGGTGATGAAGCCGAGATCCATTGAAAAAGATCTCAGTGGCACCATCAAGGAGATTCTTGGGACTTGTGTGTCTGGTGGTTGTATGGTTGATGGGAAGGACCCTAAGGATCTGCAGCAATAG 375 0.496 MLSKFNTSQMVDIYVQVTSGEFDPLGLSLKKIQEDIMKETTLLPSSLFLDSLQPEETLERDRRKTKNIKHNGNISLDDVVVEIVRVMKPRSIEKDLSGTIKEILGTCVSGGCMVDGKDPKDLQQ* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1518 124 SMART rl11c 13 115 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja1g1518 124 PANTHER 60S RIBOSOMAL PROTEIN L12 57 124 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja1g1518 124 PANTHER 60S RIBOSOMAL PROTEIN L12 1 41 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja1g1518 124 Pfam Ribosomal protein L11, RNA binding domain 63 114 IPR020783 GO:0003735|GO:0005840|GO:0006412
Lja1g1518 124 PANTHER 60S RIBOSOMAL PROTEIN L12-3 1 41 - -
Lja1g1518 124 PANTHER 60S RIBOSOMAL PROTEIN L12-3 57 124 - -
Lja1g1518 124 SUPERFAMILY Ribosomal protein L11, C-terminal domain 61 119 IPR036769 -
Lja1g1518 124 Gene3D - 44 124 IPR036769 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1518 Lja-Chr1 16433344 16433973 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1518 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 51.923 8.72e-45 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1518 K02870 - vvi:100244384 144.05