Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1510 ATGGGAAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAAGATATCATTCTTGTCTCTTACATCCAAGAACATGGTCCTGGAAATTGGAGATCAGTTCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTACCTGAGGCCAGGAATTAAGAGAGGGAACTTCACTCCTCATGAAGAAGGGATGATAATTCACTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGACATAAAGAATTATTGGAACACACATCTTAAGAAGAAGCTCAAGAAATTCCAATCGTCCATAGAACCAGACTCAACGAACTACCTACCAAGGAGCTTCAGTGACAGAAGCTTAGATATCAGCAGCAGCAGCAATATTAATAACAACCATGCCTCATCAATGACTCAAACTTCTCAGTCCTCCACCACATATGCATCAAGCACTGAGAACATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCATCAAAAAAGCCACAACTCAAAGGAACAAGCACAACAACCAGAGATCATGAAGAAGAAAAGGAAGAACTTCAAGGAAATGAAAATGATCATAAGCTGAAGCAAGACATGATGTCACATGAAGAGTTTGATTCGATTCTGTCATTTGAGAATCTGAACAATAATGCTGCTTGGGACAAGTCAACCTGTGATTCCATGCCTGAAAAGATGAGTACTTTTGAAGCTGCTTCTGTTTCTGACAAGAATAACAACAGGCAAAAACATCATGAGATCAATGTTGTTAACAGTGCTCCTCCTCCATTGTCATATCTTGAGAAGTGGCTATTGGATGAGAATGTTGGTCAAGTGGAGGAGATGATGGAAATGTCTCCAATATTCTGA 933 0.4116 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQSSIEPDSTNYLPRSFSDRSLDISSSSNINNNHASSMTQTSQSSTTYASSTENISRLLEGWMRSSPSKKPQLKGTSTTTRDHEEEKEELQGNENDHKLKQDMMSHEEFDSILSFENLNNNAAWDKSTCDSMPEKMSTFEAASVSDKNNNRQKHHEINVVNSAPPPLSYLEKWLLDENVGQVEEMMEMSPIF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1510 310 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja1g1510 310 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja1g1510 310 CDD SANT 69 112 IPR001005 -
Lja1g1510 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja1g1510 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Lja1g1510 310 CDD SANT 16 61 IPR001005 -
Lja1g1510 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja1g1510 310 SMART sant 66 114 IPR001005 -
Lja1g1510 310 SMART sant 13 63 IPR001005 -
Lja1g1510 310 MobiDBLite consensus disorder prediction 180 214 - -
Lja1g1510 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja1g1510 310 Gene3D - 68 131 - -
Lja1g1510 310 MobiDBLite consensus disorder prediction 194 214 - -
Lja1g1510 310 MobiDBLite consensus disorder prediction 142 168 - -
Lja1g1510 310 Gene3D - 13 66 - -
Lja1g1510 310 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja1g1510 310 PANTHER TRANSCRIPTION FACTOR MYB60 1 302 - -
Lja1g1510 310 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1510 Lja-Chr1 16363217 16364976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1510 1 126 MYB Transcription Factor Family AT5G62470 87.302 1.77e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g1510 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1510 K09422 - gmx:100817854 414.846