Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1505 ATGTCATTTCCACGATGTTGCTTTCTATGTATTTTTCTTCTTTTGGGTTTAGGTATAGAGCTAGCAAACTCTCAGCATTATAGAGTAGTGGGAGGAAAACTACTACCTTACAAGACAATCATCGTGGATCAATCAGGGCATGGAAACTTCAAAACCATACAATCTGCTATTGATTCAGTCCCTTCCAACAACAGGTTTTGGGTTTCCATCATTGTAAAGGCAGGTATCTACAGGGAGAAGGTGGCAATTCCAGTTGAAAAGCCTTATATCCTATTGCAAGGAGAGGGAAAGACGAAAACCCTTGTTGAGTGGGCTGACCATGATAACACATTACAGAGCGCTACATTCAGAACCTTGGCTGACAATATAGTCGTCAAGTTTATGAGTTTTATTAATTCTTACAAGAGTAAAGTCAAACTACCTGCAGTAGCTGCCTTGGTAAGCGGTGACAAGTCTTACTTCCTTAGTGTTGGTTTCTTTGGTTTTCAAGATACTCTATGGGATGATCGTGGAGCTCATTACTTCAAGTCTTGTACCATCAAAGGTGCTATTGATTTTATCTTTGGTGATGGTCAATCATTATACGAGGATTGTACCATATCTGTTATTGCTGCACCTCTAGGTCCAGGAATTTCTGGTATTATCACAGCACAAGGTAGGGTAAGTCCCAACGAATCAAGTGGATTTGTTTTTAAGAATTGTGTTATCGATGGAACTGGTACAACTTACTTGGGAAGACCATGGAGAAAATATGCTAGAGTTCTTTTCTACCACACAAAAATGTCTAACATTATACATCCAAATCGTTGGGATCCAGGGCATTTCCGCAATCAAGAGAGTCACACAACATTCGCAGAGTATAACAATTTTGGACCAGGTTCTAACTCTTCCCCGCAATGGACTAGGAAATTGGGTTTATCAACAGTTAATTGGATGGCAAGTTTTAGCTTCATTGACAGCAATGGTTGGCTTAAGACCAGCCTAAGAATAGGTTCTTGA 999 0.3994 MSFPRCCFLCIFLLLGLGIELANSQHYRVVGGKLLPYKTIIVDQSGHGNFKTIQSAIDSVPSNNRFWVSIIVKAGIYREKVAIPVEKPYILLQGEGKTKTLVEWADHDNTLQSATFRTLADNIVVKFMSFINSYKSKVKLPAVAALVSGDKSYFLSVGFFGFQDTLWDDRGAHYFKSCTIKGAIDFIFGDGQSLYEDCTISVIAAPLGPGISGIITAQGRVSPNESSGFVFKNCVIDGTGTTYLGRPWRKYARVLFYHTKMSNIIHPNRWDPGHFRNQESHTTFAEYNNFGPGSNSSPQWTRKLGLSTVNWMASFSFIDSNGWLKTSLRIGS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1505 332 ProSitePatterns Pectinesterase signature 2. 180 189 IPR033131 -
Lja1g1505 332 Gene3D - 36 330 IPR012334 -
Lja1g1505 332 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 326 - -
Lja1g1505 332 Pfam Pectinesterase 40 298 IPR000070 GO:0030599|GO:0042545
Lja1g1505 332 PANTHER PECTINESTERASE 10-RELATED 20 326 - -
Lja1g1505 332 SUPERFAMILY Pectin lyase-like 36 326 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1505 Lja-Chr1 16266389 16270129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1505 40 327 Carbohydrate Esterase AT1G05310 42.525 3.53e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1505 - - gmx:100819252 407.527