Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g1485 | ATGGCAGCCTCCGAAGGTTCTAGCATCTCTGCCACCTCAGAAGGAGGCGTCCGAAATGAAGACAACAACAACAACAACAAGGTGCTGAAAATGAAGGAGAAGGAAGACGAGGAGGGTTCCAACGGATCAAGTTCCCAGAATGTTCTTGATTTCGTGAATCTCTCCAAAGATGATTCTGTTTGTGGGTCGGTGCAAGAGCTTGATTTTTTCAACTTGGGGAAAACCGCGGTGGGTTCATCATCATCAAGCCGGGCTAATAACAATGACATCAACGACGGTGAAGGCAGAGACGAGGAGAAAACCTCTGAATCGAAGACTTTCTCTTGTAACTTTTGCAAGAGGCAGTTTTCTTCGTCACAAGCCCTCGGAGGACATCAGAATGCCCACAAGCCTGAACGCGCACTTGCAAAGCGTAGACAAGAGCTTCACAACGCTGGTGCTTTTTGCCACCCTCATTTTCCTTATTACACTTATCCTAGTCTCTCAACATCCCCTTATTATGGATCTTATAGCAAAGCACTTGGGATTAGGAGGGATTCCATGATTCACAAGCCAGCCTATCCTCTCACCCCACCTGGCTTCAGGTTTGGTCAAGGTGCTTCTGCTTGGTCATCAATGCAAGACATGTTGAACATTTCTTCTCTTGATAGATTGAGGATGGGTCCTGGTTTGAATCCAAATATTGGAGTTGGGATTCTAGGAAATGGAGGTTCAATTAGTGCACCACCACCTTTGAAGGTAGAAGATGAGGGTAGTAGAACTGCTGGAACCACTCTCCAATTTGGAGAATCTTCTGCAAATGCTGCTGCAAGGTCAAACACAACCCTGGACAAGTCAACTCTGGTTACCACTGGTGAACATCATCAGTCCAACGTTGAAGAACCTGACCCTTCTGGGCTTGATTTGTCTCTTAAACTTTAA | 921 | 0.4604 | MAASEGSSISATSEGGVRNEDNNNNNKVLKMKEKEDEEGSNGSSSQNVLDFVNLSKDDSVCGSVQELDFFNLGKTAVGSSSSSRANNNDINDGEGRDEEKTSESKTFSCNFCKRQFSSSQALGGHQNAHKPERALAKRRQELHNAGAFCHPHFPYYTYPSLSTSPYYGSYSKALGIRRDSMIHKPAYPLTPPGFRFGQGASAWSSMQDMLNISSLDRLRMGPGLNPNIGVGILGNGGSISAPPPLKVEDEGSRTAGTTLQFGESSANAAARSNTTLDKSTLVTTGEHHQSNVEEPDPSGLDLSLKL* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g1485 | 306 | Gene3D | Classic Zinc Finger | 81 | 149 | - | - | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 76 | 104 | - | - | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Lja1g1485 | 306 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 109 | 129 | IPR013087 | - | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 25 | 40 | - | - | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 281 | 306 | - | - | |
| Lja1g1485 | 306 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 107 | 134 | IPR013087 | - | |
| Lja1g1485 | 306 | Pfam | C2H2-type zinc finger | 107 | 131 | - | - | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Lja1g1485 | 306 | PANTHER | ZINC FINGER PROTEIN JAGGED | 3 | 306 | IPR045320 | GO:0003700 | |
| Lja1g1485 | 306 | MobiDBLite | consensus disorder prediction | 90 | 104 | - | - | |
| Lja1g1485 | 306 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 3 | 306 | - | - | |
| Lja1g1485 | 306 | SUPERFAMILY | beta-beta-alpha zinc fingers | 104 | 134 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g1485 | Lja-Chr1 | 16035950 | 16036870 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g1485 | 23 | 186 | C2H2 Transcription Factor Family | AT5G10970 | 36.970 | 9.95e-23 | 93.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g1485 | - | - | lja:Lj1g3v2534910.1 | 366.696 |