Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1479 ATGTATCAGGAAAAGAAGTTTTCTCCAACAACCATGGTGCCACAGAAATCTCAAGGTGGTGGTGGTGGTGCTGAGCAGCTTGCTAATGTTGGGGTTTTGGCCTTGGGTGGATCTGCTGCTGTTAGAAGCCCCACACCTGCTGGGGGGAATGGGAAACAACGTTTACGCTGGACTTCGGATCTTCATGACCGCTTTGTGGATGCTATTACTCAGCTTGGTGGACCAGATAGAGCGACACCAAAAGGTGTTCTGAGAGTGATGGGTGTACCTGGACTGACCATTTATCATGTCAAAAGCCATTTACAGAAGTATCGCCTGGCAAAGTACTTACCTGATTCACTAGTTGATGACTCTAAAGAGGAGAAAAGGACTTCTGGAGACAGCACTTCCGGTGTTGATTCTTCCCCGGGATTGCAAATCAATGATGCTCTAAGAATGCAAATGGAGGTTCAGAAACGTCTCCATGAACAGCTTGAGGTTCAAAAGCAGTTACAAATGAGAATTGAAGCTCAGGGCAAATACTTGCAGAAGATCATAGAGGAACAGCAAAAATTAGGTAGTACCTTGACAGTCTCAGAAATGCTTCCACTGTCACATGATAAGCAAAATCATCCTCAGTCAGAGCCTTCTGGATCCAGTGATGCCCTTGCCGGCACTTTGTCTCCACATAAACGACGGAGAATTGATGATGGTTCAAATGATGACTTAGCTGCTTCCCAAGATCCAAGAGAGACTGCACAGAAGAATGACTGCAATGTCGGTCAATTAGATCCAAACTTGTATGAAGATGATGCAGGGTTTGGATATGATTTGGAGAGAGAAAATGATGAAGATGAGGAGAGTGAGCAATAA 852 0.4495 MYQEKKFSPTTMVPQKSQGGGGGAEQLANVGVLALGGSAAVRSPTPAGGNGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPDSLVDDSKEEKRTSGDSTSGVDSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLTVSEMLPLSHDKQNHPQSEPSGSSDALAGTLSPHKRRRIDDGSNDDLAASQDPRETAQKNDCNVGQLDPNLYEDDAGFGYDLERENDEDEESEQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1479 283 Pfam Myb-like DNA-binding domain 55 105 IPR001005 -
Lja1g1479 283 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g1479 283 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 107 IPR006447 GO:0003677
Lja1g1479 283 MobiDBLite consensus disorder prediction 238 254 - -
Lja1g1479 283 Pfam MYB-CC type transfactor, LHEQLE motif 138 184 IPR025756 -
Lja1g1479 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 277 IPR044848 GO:0003700
Lja1g1479 283 MobiDBLite consensus disorder prediction 220 237 - -
Lja1g1479 283 MobiDBLite consensus disorder prediction 116 138 - -
Lja1g1479 283 Gene3D - 51 110 - -
Lja1g1479 283 SUPERFAMILY Homeodomain-like 52 106 IPR009057 -
Lja1g1479 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 109 IPR017930 -
Lja1g1479 283 MobiDBLite consensus disorder prediction 199 217 - -
Lja1g1479 283 MobiDBLite consensus disorder prediction 1 17 - -
Lja1g1479 283 MobiDBLite consensus disorder prediction 269 283 - -
Lja1g1479 283 PANTHER OS05G0491500 PROTEIN 4 277 - -
Lja1g1479 283 Coils Coil 141 161 - -
Lja1g1479 283 MobiDBLite consensus disorder prediction 199 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1479 Lja-Chr1 15942677 15946839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1479 44 243 G2-like Transcription Factor Family AT3G13040 44.595 3.47e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g1479 Myb_DNA-binding 2.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1479 - - lja:Lj1g3v4048450.1 531.561