Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1477 ATGGTTAACGAATCCATCACCAAGAAGCGAAAGCTCGTCCCCAAATCCTCTCAATCGGCGGAGCTACCGTTCAAGCTGCAGAACAAGTTGGAGGCTGAGGTTCAAGAGTACGAAGAAGTCGAAGAAGAAGTAGAGGAAGAAGTGGAGGAGGAAGAAGAAGAGGAGGAAGAGGAAGAGGAGGGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGTGGAAGCGGAAGCGGAGGAGGAAGACGATGAACCGATCCAGAAGCTTCTCGAACCCATGGGGAAGGAGCAGATCATTAGCCTCCTTGCCGACGCGGCGTCTAACCACCGCGATGTAGCAGATCGGATCCGTAAGGTGGCCGACGAGGACGTTTCTCATCGGAAAATCTTCGTTCACGGCCTCGGGTGGGATACCACCGCCACGACGCTGGTTTACGCGTTCCAGCAGTACGGCGCGATTGAGGATTGCAAGGCGGTTACCGATAAGGTCACCGGGAAGTCGAAGGGGTACGGGTTTATTCTCTTCAAGTCGCGGCGTGGTGCGCGTAACGCGCTCAAGGAGCCGCAGAAGAAGATCGGGAATCGTATGACAGCGTGCCAGCTTGCGTCGATTGGGCCCGTGCAGCAGAGCCTGCCTGCGGCGGCGGCTGCGCCGTCGCCGCAGACGGAGTACACTCAGAGGAAGATTTATGTGAGCAACGTGGGAGCCGATCTGGATCCGCATAAGCTGCTGGCGTTCTTCTCGCGGTTTGGGGAGATTGAAGAAGGGCCGTTGGGGCTTGATAAGCTTACTGGGAAGCCGAAGGGGTTTTGCTTGTTCGTTTACAAGAGCCCGGAGGGCGCGAGGCGCGCCTTGGAGGAGCCTCACAAGGAATTCGAGGGTCAAATTTTGCATTGTCAGAAGGCGATTGATGGACCCAAGGCCGCGAAAACTCCGCAGTATCAACCGCAGCAGGGTATTCAGAGAACCCAGTTTCAGAGGAATGACAACAACGCTGGCTTTCTCGGTGGTGCTGGTGCTGGTGGTGTAGCTGGTTCTCAACCTGGCCACTTGATGGCCCCTGCAGGACCTGGGATTGCTTACAGTCAAGCTGCTGCGGCGCAGGCGGCGGCACTGAACCCGGCTCTGGGGCAGGCGTTGACCGCGCTGCTGACGTCTCAGGGTGCGCTGGGTCTGACTAATTTGTTAGGAGGCCTCGGAACGAGTGGTGGGATTAATCCGGTTGTGAGTTCTGCTGCTGCTGCGGGGCATGGCGTGCAGAGTGGTTACAGTGCCCAGCCAAGTATAAGCCCTGGTGTTATTGGAGGGTATGCAAGTCAGCTCGGGTTGCAGGCGCAATATCAGAACCAGCAGACCGGGCAGGGTGGCACTGGGAGAAGTCAATATGGTGGTGCTCCTTACATGGGGCAGTAG 1413 0.5676 MVNESITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKEPQKKIGNRMTACQLASIGPVQQSLPAAAAAPSPQTEYTQRKIYVSNVGADLDPHKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYKSPEGARRALEEPHKEFEGQILHCQKAIDGPKAAKTPQYQPQQGIQRTQFQRNDNNAGFLGGAGAGGVAGSQPGHLMAPAGPGIAYSQAAAAQAAALNPALGQALTALLTSQGALGLTNLLGGLGTSGGINPVVSSAAAAGHGVQSGYSAQPSISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYGGAPYMGQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1477 470 MobiDBLite consensus disorder prediction 35 85 - -
Lja1g1477 470 SUPERFAMILY RNA-binding domain, RBD 215 322 IPR035979 GO:0003676
Lja1g1477 470 PANTHER GEO13361P1-RELATED 31 469 - -
Lja1g1477 470 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g1477 470 Gene3D - 27 208 IPR012677 -
Lja1g1477 470 SMART rrm1_1 228 300 IPR000504 GO:0003723
Lja1g1477 470 SMART rrm1_1 128 200 IPR000504 GO:0003723
Lja1g1477 470 MobiDBLite consensus disorder prediction 449 470 - -
Lja1g1477 470 CDD RRM_RBM24_RBM38_like 227 302 - -
Lja1g1477 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 295 IPR000504 GO:0003723
Lja1g1477 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 195 IPR000504 GO:0003723
Lja1g1477 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 204 IPR000504 GO:0003723
Lja1g1477 470 Coils Coil 27 84 - -
Lja1g1477 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 310 IPR000504 GO:0003723
Lja1g1477 470 MobiDBLite consensus disorder prediction 1 85 - -
Lja1g1477 470 Gene3D - 209 319 IPR012677 -
Lja1g1477 470 PANTHER - 31 469 - -
Lja1g1477 470 SUPERFAMILY RNA-binding domain, RBD 119 206 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1477 Lja-Chr1 15907329 15913911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1477 214 310 C2H2 Transcription Factor Family AT2G19380 36.735 3.54e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1477 K12741 - gmx:100784200 503.827