Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1470 ATGATGATGGTGGGACGAACGAGGCTTGTGGTGTCAGATTTCGTTCTTTCTTTCATGTGGGTATGGTCTGGTGTTCTGGTTCGGATATTCGTCTTCAAATATCTGGGTTTGGGTCATGACCATGTCGGTGAGATTGTCAAGATTGTCTTCTCTGTCGTCAACATGTTCTTCTTCGCGTTCCTTGCTAAGGTTACCCGTGGTGGGGCCTACAACCCTCTCACCGTTTTGTCTGGTGCTATCTCTGGAGATTTCAGCAACTTCATCTACTGTCTTGGTTCTAGAATTCCCGCCCAGGTTCTTGGATCTATTGTTGGAGTTAAACTTCTCATTGATACCATTCCTGAAGTAGGGCGTGGACCACGTTTGAATATTGACATCCATCGGGGCGCATTGACAGAAGGATTACTGACATTTGCAATTGTAAGTGTTTCACTTGGGCTTGCCACAAAAATTCCTGGAAGTTTCTTCATGAAGACTTGGATCTCCAGCCTTTCCAAGCTAACGCTTCACATACTTGGCTCTGATCTTACTGGTGGTTGTATGAACCCAGCAGCTGTAATGGGATGGGCTTATGCTAGAGGGGATCACATAACAAGAGAGCACATCCTTGTATACTGGCTTGCCCCCATAGAGGCAACTATTTTGGCAGTGTGGACATTCAAATTGTTAGTCCCTCCTGTGAAAGAAGATAAAACAGGCTCCAAAAGTAAATCAGATTGA 720 0.4514 MMMVGRTRLVVSDFVLSFMWVWSGVLVRIFVFKYLGLGHDHVGEIVKIVFSVVNMFFFAFLAKVTRGGAYNPLTVLSGAISGDFSNFIYCLGSRIPAQVLGSIVGVKLLIDTIPEVGRGPRLNIDIHRGALTEGLLTFAIVSVSLGLATKIPGSFFMKTWISSLSKLTLHILGSDLTGGCMNPAAVMGWAYARGDHITREHILVYWLAPIEATILAVWTFKLLVPPVKEDKTGSKSKSD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1470 239 SUPERFAMILY Aquaporin-like 4 230 IPR023271 -
Lja1g1470 239 PRINTS Major intrinsic protein family signature 8 27 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 PRINTS Major intrinsic protein family signature 90 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 PRINTS Major intrinsic protein family signature 132 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 PRINTS Major intrinsic protein family signature 163 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 Gene3D Glycerol uptake facilitator protein. 5 238 IPR023271 -
Lja1g1470 239 PANTHER AQUAPORIN SIP2-1-RELATED 3 239 IPR044226 GO:0015267
Lja1g1470 239 Pfam Major intrinsic protein 7 219 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja1g1470 239 PANTHER AQUAPORIN SIP2-1-RELATED 3 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1470 Lja-Chr1 15848602 15852045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1470 4 239 Major Intrinsic Protein MIP AT3G56950 62.447 1.59e-109 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1470 K09875 - gmx:100786138 397.897