Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1466 ATGGATCACAATTTAGGTCAAGACCCTGCACCTGCAGCTGGGTCCTTTGATAAGTCTAGGGTTTTAAATGTTAAGCCATTGAGAACTCTTGTCCCTGTGTTTCCTTCACCATCCAATCCCTCTTCATCTGCAACCCCACAAGGTGGTGCTCCTTTTGTTTGTGTTTCTCCTTCTGGTCCTTTCCCCTCTGGGGTTGCGCCGTTTTACCCTTTCTTCGTCTCCCCGGAGTCCCAGAGACTCTCTGAACAAAATGCACAAACCCCAACTGCTCAACGTGCTGCCCCAATATCTGCTGCAGTTCCAATTAATTCATTCAGGACACCAACTGGGGCTACAAATGGAGATGTGGGTTCCTCGCGGAGGAAAAGTCGTGGCCAGTTACCAGAGGATGATAACTTTGTTGATCTGAGTGAAGTTGATGGAGAAGGTGGAACTGGAGATGGGAAGAGGCGCAAGCCACAGAAGAGGATAAGGGAAAAGCGCTGCTCTTCTGATGTTGATCCAGATGCAGTGGCTAATGAAATTCTGAAAACAATTAACCCTGGGGTTTTTGAAATACTGAATCAACCTGATGGTAGCAGGGACGCCGTTGCTTATACGCTTATGATATATGAAGTGATGAGGAGGAAGCTTGGACAAATTGACGAGAAAGCAAAGGGATCCCATTCTGGAGCAAAGCGCCCTGATCTAAAGGCTGGTACACTTATGAATACCAAAGGGATTCGGGCTAACAGCAGGAAGAGAATTGGAGTTGTTCCTGGTGTCGAGGTTGGGGATATTTTCTTCTTCCGATTTGAGTTGTGCTTGGTGGGGTTGCATGCTCCTTCTATGGCTGGAATTGATTACTTGGGCACCAAAGTCAGTCAAGAAGAAGAGCCATTAGCTGTCAGTATTGTATCTTCTGGAGGGTATGAAGATAATGTGGAGGATGGCGATGTGCTGATTTACAGTGGACAAGGTGGGACTAGCCGTGAAAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGAGAGGAGCCTGCACAGAGGTAATGATGTGAGAGTAATTAGGGGTATGAGGGATGAAGCACATCCAACTGGGAAGGTATATGTCTATGATGGTCTTTACAAGATTCAGAATTCATGGGTGGAGAAAGCGAAATCTGGTTTCAATGTGTTCAAATACAAATTAGTCAGATTGCCTGGGCAGCCCCAAGCATACATGATATGGAAATCCATTCTACAATGGACTGATAAGTCTGCTTCAAGAGTGGGGGTTATATTGCCCGACCTTACGTCTGGGGCTGAAAAGTTACCTGTTTGTCTTGTGAATGATGTTGACAACGAGAAGGGCCCTGCATATTTCACTTACAGCCCTACTCTCAAGAATCTGAATCGATTAGCTCCTGTGGAGTCTTCTGAGGGATGCACTTGTAATGGTGGATGTCAACCTGGCAGTCATAAATGTGGTTGCACTCAAAAGAATGGAGGTTATCTCCCATATTCTGCAGCTGGGTTGCTTGCGGATTTAAAATCCGTGGTATATGAGTGCGGTCCTTCCTGTCATTGCCCTCCTAGTTGCCGAAATCGTGTTTCCCAAGGTGGCTTGAAACTTCGTCTGGAGGTGTTTAGAACAAAAGGTAAAGGTTGGGGTCTAAGGTCATGGGACCCTATTCGTGCTGGAACGTTCATATGTGAGTATGCAGGGGAAGTCATAGATAATGCTAGAGTGGAGGAGCTCAGCGGTGAGAATGAAGATGACTACATCTTTGATTCTACCCGCATTTATCAGCAACTGGAAGTTTTTTCCAGTGACGTTGAAGCTCCGAAGATCCCATCTCCCCTTTACATAACAGCAAGGAATGAAGGGAACGTTGCTCGGTTTATGAATCACAGCTGCACTCCAAATGTGTTATGGCGTCCAGTCGTACGTGAAAACAAGAATGAAGCAGACCTCCATGTTGCTTTCTATGCAATCAGACATATCCCTCCGATGATGGAATTAACTTATGATTATGGGATAGTTCTTCCTCTCAAAGTAGGTCAGAAGAAAAAGAAATGCTTGTGTGGATCTGTCAAATGCAGGGGTTACTTTTGCTAA 2091 0.4562 MDHNLGQDPAPAAGSFDKSRVLNVKPLRTLVPVFPSPSNPSSSATPQGGAPFVCVSPSGPFPSGVAPFYPFFVSPESQRLSEQNAQTPTAQRAAPISAAVPINSFRTPTGATNGDVGSSRRKSRGQLPEDDNFVDLSEVDGEGGTGDGKRRKPQKRIREKRCSSDVDPDAVANEILKTINPGVFEILNQPDGSRDAVAYTLMIYEVMRRKLGQIDEKAKGSHSGAKRPDLKAGTLMNTKGIRANSRKRIGVVPGVEVGDIFFFRFELCLVGLHAPSMAGIDYLGTKVSQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGTSREKGASDQKLERGNLALERSLHRGNDVRVIRGMRDEAHPTGKVYVYDGLYKIQNSWVEKAKSGFNVFKYKLVRLPGQPQAYMIWKSILQWTDKSASRVGVILPDLTSGAEKLPVCLVNDVDNEKGPAYFTYSPTLKNLNRLAPVESSEGCTCNGGCQPGSHKCGCTQKNGGYLPYSAAGLLADLKSVVYECGPSCHCPPSCRNRVSQGGLKLRLEVFRTKGKGWGLRSWDPIRAGTFICEYAGEVIDNARVEELSGENEDDYIFDSTRIYQQLEVFSSDVEAPKIPSPLYITARNEGNVARFMNHSCTPNVLWRPVVRENKNEADLHVAFYAIRHIPPMMELTYDYGIVLPLKVGQKKKKCLCGSVKCRGYFC* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1466 696 MobiDBLite consensus disorder prediction 103 165 - -
Lja1g1466 696 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 695 IPR025794 GO:0016571
Lja1g1466 696 Gene3D SET domain 417 695 IPR046341 -
Lja1g1466 696 SMART set_7 535 676 IPR001214 GO:0005515
Lja1g1466 696 SMART G9a_1 245 400 IPR003105 -
Lja1g1466 696 ProSiteProfiles Post-SET domain profile. 680 696 IPR003616 -
Lja1g1466 696 ProSiteProfiles YDG domain profile. 250 396 IPR003105 -
Lja1g1466 696 MobiDBLite consensus disorder prediction 142 165 - -
Lja1g1466 696 MobiDBLite consensus disorder prediction 217 237 - -
Lja1g1466 696 Pfam SET domain 546 670 IPR001214 GO:0005515
Lja1g1466 696 ProSiteProfiles SET domain profile. 535 670 IPR001214 GO:0005515
Lja1g1466 696 SMART preset_2 425 519 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1466 696 SUPERFAMILY SET domain 411 676 IPR046341 -
Lja1g1466 696 MobiDBLite consensus disorder prediction 103 120 - -
Lja1g1466 696 Pfam Pre-SET motif 429 527 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1466 696 ProSiteProfiles Pre-SET domain profile. 471 532 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja1g1466 696 Pfam SAD/SRA domain 249 400 IPR003105 -
Lja1g1466 696 SUPERFAMILY PUA domain-like 232 411 IPR015947 -
Lja1g1466 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 695 - -
Lja1g1466 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 695 - -
Lja1g1466 696 Gene3D - 233 412 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1466 Lja-Chr1 15803588 15807655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1466 6 695 Su(var)3-9 homologs AT1G73100 47.905 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja1g1466 SAD_SRA 2.6e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1466 K24405 - gmx:100805932 1158.28