Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1458 ATGGAACCACAGCAGCAGCAACCAGAGCAGCGCCACCTCCTCACCGGCGGAGGCGATTCTCCGGCGCTCTGCGGCCCCACCACCTTCACTTTCCCCTTCGCCGGCGGTGAGGGCTGCGCGTATTCAAGGGCGGTACTGGTGGTGGACATGGTGTGGAACCTGGCGTTCGTGGTGGCCGCCGCCGGCGTGCTCCTCTTCACGCTCCACGAGCGGCCTTCTACTCCCTTGAGGCTGTGGCTCTGTGGCTACGCCTTCGAGTGTCTTCTCCACATGGCTTTCGTCTACTCTGAGTATCGCTCCTCCACGGCTCTTGATTCCTTCTCCCGCACTCCCTACAGTATTTTGAAGAAGTTGGAACCTATGAACACTTTGACATCGTCCGTTTGGTGGGTGTTTGGATTTTACTGGATTGTTGTGGGCGGCCAAGCACTTGTGGAGGATTCTCCACGTCTCTACTGGTTAACGGTGGTCTTTCTAGCATTCGATGTATTTTTTATTATCTTTTGCATTGGGATGGCGTGTGTAGTTTTCTTTGCTCTCTTCTGCATCCTCCCAATAATAGCATTAGCTTATGCTATAAGAATCAGAGAAGGTGCATCTGAAGAAGATATCAAGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCACTGCTGATGGTCCATGACAACAAGAAGCAGCTTATTAATGCAAGAAATGATTCATGCAACGAAAGCCATACAAGTGAAATTTTTCTAGATCCAGATGATTCGGAATGCTGTATCTGCCTGTGTACATATGTTGATGGAGTAGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATAGTGGATGCATTAGCCGATGGCTTCGGACGAAAGCAACCTGCCCCCTCTGCAAATTTAATCTCCTTAGAGCTGATACATTGGTTTGA 915 0.4951 MEPQQQQPEQRHLLTGGGDSPALCGPTTFTFPFAGGEGCAYSRAVLVVDMVWNLAFVVAAAGVLLFTLHERPSTPLRLWLCGYAFECLLHMAFVYSEYRSSTALDSFSRTPYSILKKLEPMNTLTSSVWWVFGFYWIVVGGQALVEDSPRLYWLTVVFLAFDVFFIIFCIGMACVVFFALFCILPIIALAYAIRIREGASEEDIKSLPKYRFSQSNSLLMVHDNKKQLINARNDSCNESHTSEIFLDPDDSECCICLCTYVDGVELYRLPCTHHFHSGCISRWLRTKATCPLCKFNLLRADTLV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1458 304 PANTHER RING-FINGER UBIQUITIN LIGASE 38 304 - -
Lja1g1458 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 303 IPR013083 -
Lja1g1458 304 PANTHER TARGET OF ERK KINASE MPK-1 38 304 - -
Lja1g1458 304 SUPERFAMILY RING/U-box 246 298 - -
Lja1g1458 304 SMART ring_2 253 293 IPR001841 -
Lja1g1458 304 Pfam Ring finger domain 252 294 IPR001841 -
Lja1g1458 304 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1458 Lja-Chr1 15699378 15703927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1458 40 301 C3H Transcription Factor Family AT1G68070 46.429 1.13e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1458 - - lja:Lj1g3v4079400.1 619.387