Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1454 ATGGTGTATGGAGCAAGTTGTGCGTTGAGCTATGGAACCATTTGGCGTCAACCGACTCTTCATCTTCAATTCCATAGGTGCTCTTCACTCTCTTTCAACTTAAACTTCAACAACAACAAATTATCCACCCTCCCCTTCAACCGCTCTGGACCCTCACTCACCCAGCTCAGCTTCCATGATTCTCGCCTCTCCGCACTCTCGAATGATGGTTCAGGCGGTACCGGTGGTGGTTCTGGTGGGTGGAATCCTGGCGATGGTGATGATGATGGCGTAGAAAAGTGGTCCTTCTTCCTATCATGCGTTAGGAAGGAATTAGAACCTATGAAATCTCTCGCATCAGCTGCTTGTTGGGTGTTTGGATTTTACTGGTTTTTTGTGGGCGGCCAAGCAGCTATCGAAGATTGTCCAGATCTTTTATGGGTTATGATGGACTTTGTAGCCTATGATTTATTTTGTACTTACTTTTACATTGGGATGGCGGGTGTAGTTTTCTTTGTTATGATCCTAATTATAGCATTAGCTTATGCTAATGCTACAAGAATCAGAGAAGGTGCATCTGAAGAAGACATCAGGTCACTTCCTAAGTATAGGTTTAGTCAGTCAAATTCATTGATGACAATTGATGACAATATGGAGTCCAATGGAAGTCATACAAGTGAAATTTCTCTCCATCCAGATGATTCTGAATGCTGTATCTGCCTGTGTACATATGATGACGGAACAGAACTCTATCGCCTTCCCTGTACCCACCATTTTCATTGTGAATGCATCAGCCGATGGCTTCGGACTAAAGCAACCTGCCCGCTCTGCACATTAGATATACATGGAAGTAGCAGACTAGCAGGGTAG 849 0.4417 MVYGASCALSYGTIWRQPTLHLQFHRCSSLSFNLNFNNNKLSTLPFNRSGPSLTQLSFHDSRLSALSNDGSGGTGGGSGGWNPGDGDDDGVEKWSFFLSCVRKELEPMKSLASAACWVFGFYWFFVGGQAAIEDCPDLLWVMMDFVAYDLFCTYFYIGMAGVVFFVMILIIALAYANATRIREGASEEDIRSLPKYRFSQSNSLMTIDDNMESNGSHTSEISLHPDDSECCICLCTYDDGTELYRLPCTHHFHCECISRWLRTKATCPLCTLDIHGSSRLAG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1454 282 PANTHER TARGET OF ERK KINASE MPK-1 95 276 - -
Lja1g1454 282 SUPERFAMILY RING/U-box 223 274 - -
Lja1g1454 282 CDD RING-H2_RNF111_like 229 273 - -
Lja1g1454 282 SMART ring_2 230 270 IPR001841 -
Lja1g1454 282 Pfam Ring finger domain 229 270 IPR001841 -
Lja1g1454 282 ProSiteProfiles Zinc finger RING-type profile. 230 271 IPR001841 -
Lja1g1454 282 PANTHER RING-FINGER UBIQUITIN LIGASE 95 276 - -
Lja1g1454 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 276 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1454 Lja-Chr1 15665033 15667886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1454 82 274 C3H Transcription Factor Family AT1G68070 39.130 9.43e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1454 - - lja:Lj1g3v4080570.1 557.755