LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1447	ATGGGAAAAGCAGCCGAAGAAGAACACCAACCGCTGCCACGTGGCGGAACCTCCACCGATCCGGCGCTGAATGCGGAGGAAGATTGTCGGTGCCGGTGTTCTCGGATTCGGAAGCTTCTCAGTGTTAGATGCATCCTCGTGCTGCTGTTCTCCGCCGCTCTGTTCCTCTCTGCTTTGTTTTGGTTGCCCCCTTTTCTTCGCCTCGCAGATCAGAAGCATCTGCATGAAAATTCCAGATACAAAGGTCATGATATTGTCGCAAGCTTTATTGTTAATAAGTCAGCCTCTTTGCTAGAAGATAACATCCCGCAACTCGCGGATGAAATTTTTGATGAGATAGGAGCTCCCTCTACCAAAGTGGTCATCTTGTCTCTAGATCCTTTACCTGGGCCAAATAAGACAAAAGTAGTGTTTGCAGTTGATCCTGATGTTGGATTATCAGAAATGGCTCAAGCTGCCATTAGTTTGATAAAATCATCATTTACATCCATCATTATACGTGACTCACCTTTCCAGCTCACTTCTTCATCCATATTCGGAGATCCCTTCTTTTTTGAAGTGCTGAAATTTAAGGGAGGAATTACTATAATTCCACATCAGACGGCATTTCCTCTGCAGCAAAGGCAGACACTATTCACCTTTACTCTGAATTTCCCCATTTATCAAATACAATTGGATTTTGATGAGCTCACAAGTCAGCTAAAGTCTGGATTACATCTGGCATCCTTTGAGAACTTGTATATGAGCTTATCCAATTCTGAAGGTTCAACAGTAGATGCTCCTACTACTGTTCAGTCATCTGTTCTACTTGCAATTGGAATTACTCCATCAAAACAGAGGCTAAAGCAACTAGCACAAACCATCATGGGACCTCATAATCTTGGCTTGAATAACACGGAATTTGGTAGGGTTAAGCAGGTCCGACTTTCATCCATCTTGCAGCACTCCCTGCATGGCAATGATGGTAGTGGCTCTGCATGGTCACCTTCTCCTTCTCCTCTGCCTCATCCATCACACCACCACCACCACCACCACCATCACCACCACCATCACCACCACCACCACGATGCCCATCTAGCTCCTTCTCCTATGCCTGCACCTGCACCTATACCCGGGGAGGGTGCAACTCCACCTGAGGTTGGTCCTCCTGTTGCACCAAAAAGTGTGCCTGCACCAAAGAGAAGTCCTCAAGCACAGCCTCCTAGTTTTCAATTTGAGCGTAGAAAAAGGTCTAGCCATAATGCTGGGAAGCATGCTCATCTAGCACCTTCAATTGCCCCTACTACTCATCGACATTATCATAGTCCTGTTGCGTCACCAAAACCACCGTTTGAACCCCCGGCGCGTAACTCTCGTGCAGTACCTGCCTTGAGTCCGTTACCAAATGTAGCTTTTGCTCATGCTGAGCCCCCTCCTAATAATGAACCAGCTCCAGAACGTATGCGGATGCATTCACACGGACCATCATTATCGACATCCTCTGCAGGTAGTCTTGGATCTGTCAAATGGACATTCTTAATGTTTATTGTACTTGTGTTACATGTGTAA	1548	0.4632	MGKAAEEEHQPLPRGGTSTDPALNAEEDCRCRCSRIRKLLSVRCILVLLFSAALFLSALFWLPPFLRLADQKHLHENSRYKGHDIVASFIVNKSASLLEDNIPQLADEIFDEIGAPSTKVVILSLDPLPGPNKTKVVFAVDPDVGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIFGDPFFFEVLKFKGGITIIPHQTAFPLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLHLASFENLYMSLSNSEGSTVDAPTTVQSSVLLAIGITPSKQRLKQLAQTIMGPHNLGLNNTEFGRVKQVRLSSILQHSLHGNDGSGSAWSPSPSPLPHPSHHHHHHHHHHHHHHHHHDAHLAPSPMPAPAPIPGEGATPPEVGPPVAPKSVPAPKRSPQAQPPSFQFERRKRSSHNAGKHAHLAPSIAPTTHRHYHSPVASPKPPFEPPARNSRAVPALSPLPNVAFAHAEPPPNNEPAPERMRMHSHGPSLSTSSAGSLGSVKWTFLMFIVLVLHV*	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1447	515	MobiDBLite	consensus disorder prediction	362	397	-	-
	Lja1g1447	515	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lja1g1447	515	MobiDBLite	consensus disorder prediction	316	451	-	-
	Lja1g1447	515	PANTHER	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	1	514	-	-
	Lja1g1447	515	MobiDBLite	consensus disorder prediction	336	357	-	-
	Lja1g1447	515	MobiDBLite	consensus disorder prediction	463	495	-	-
	Lja1g1447	515	PANTHER	F20B24.21	1	514	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1447	Lja-Chr1	15539462	15544597	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1447	1	313	C3H Transcription Factor Family	AT3G10810	52.698	1.83e-89	281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1447	-		-	gmx:100792490	597.816

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g1447	1	15539462	15544597	Lja1g1447	1	15539462	15544597	ECH