Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1442 ATGGCATCCTCTCAGCTAAGCCACTCACTGCAAAATGAACAGAAAACTGAAGACTTAGAATTCCCTCTGAAGGAAATTGGAAATGAAGGTCTAACAAAACGGATTCTCAGAAATGGAGTCACTTGGCAAACTCCGTTCTCCGGAGACGAAGTGGAAGTTCATTTCAGAGGACAAGTTGAAAACGGAGCACTTCTTGATTCCAGTTATGATAAAGGGTCGTCATTTCGTTTCAAATTAGGCCAATGTGAGGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATGCCACCCAATTTGGCATATGGGGGAGCAGGTTCTCCACCATTGATCCCTCCCAATGCAACTCTTATTTATGACATTGAAATGCTGTCTTGGAGCACCATCAGGGACTTGACCGGAGACGGAGGAATCATGAAAAAGGTGATTAGGGAGGGAGAAGGATGGGCTGCTCCCAAAGATGCTGATGAGGTCCTAGTGAAATATGAAGCAAGACGAAAGGATGGGATGCTTGTCTCTGAGCCTGATAAAGGGGTGGAGTTTAATGTAAGTGATGGCTATCTCTGTCCTGCAATGAGTATAGCAGTAAAGACAATGCGAAAGGGCGAGATTGCAGAGCTAGCTATCAAATTCTTATATGGGCTCAATCAAAATTCAAATAGAACCAATGAGGTTGATGGTTTACTAGATTTTATGTTCACTACCATCAAACTTGAGCTGGTATCATGGAACATTGTTACTGATATCTCGGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGCCGGTGAGGGGTTTGATCGTCCAAACGAAGGATCCCAAGTGAAAGTGATATATTTGTGCAAACAAGAAGATGGTACAGTTATTGAGAGAAAAGGGTCAAAGGAAGAACCTTTTGAATTCACAACTCAAGAAGACCAGGTACATGAGGGTCTAGAAAGAGCAATAATGACAATGAAGAAAGCAGAACTGGCTCTGGTAACAATCAGTGCTGAATATTTGTGTGACCATAATAATTTACATGGAAACACAGCCAATAATAAAGTCCTTTATTACGAAGTCGAATTGGTAGATTTCATTAAGGAAAAGCCATTTTGGAAATTGGACACTCAAGAGAAAATAGAAGCTTGTGAGAGGAAGAAGCATGATGGAAATTTGTTGTTCAAAGCTGAAAATTTCAGGCGCGCATACCATAAATATGACAAGGCTGTAAAATACATTGAGTTTGATCACTCATTCAATGAAGATGAGAAGCGTCATGCTAATTCGTTACGATTATCCTGCAATTTGAACAAAGCTGCCTGTAAACTTAAACTGGGGGAGTACACTGAAGCTTCCAGACTATGCTCAAAGGTGTTAGAACAAGACCCTTTAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTGAAGACATCAGACTTAAAGAAAGCTGAGGCTGACATTAAAAGAGCTCTGATTCTTGATCCAAATAGCAGAGACCTTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACACCAGATGTGAGGCTGACATATTTAGAAGGTCTAAATCCTCACTCGTCACACCAACTTTTGATTCTTTCACCATCCAAACTGCATCCACCACCACCAAATCCTAA 1662 0.4067 MASSQLSHSLQNEQKTEDLEFPLKEIGNEGLTKRILRNGVTWQTPFSGDEVEVHFRGQVENGALLDSSYDKGSSFRFKLGQCEVIKGWDEGVATMKKGERAIFKMPPNLAYGGAGSPPLIPPNATLIYDIEMLSWSTIRDLTGDGGIMKKVIREGEGWAAPKDADEVLVKYEARRKDGMLVSEPDKGVEFNVSDGYLCPAMSIAVKTMRKGEIAELAIKFLYGLNQNSNRTNEVDGLLDFMFTTIKLELVSWNIVTDISGDKKILKKIKKAGEGFDRPNEGSQVKVIYLCKQEDGTVIERKGSKEEPFEFTTQEDQVHEGLERAIMTMKKAELALVTISAEYLCDHNNLHGNTANNKVLYYEVELVDFIKEKPFWKLDTQEKIEACERKKHDGNLLFKAENFRRAYHKYDKAVKYIEFDHSFNEDEKRHANSLRLSCNLNKAACKLKLGEYTEASRLCSKVLEQDPLNVKALYRRCQAYLKTSDLKKAEADIKRALILDPNSRDLKLEYKELKLKQKEYTRCEADIFRRSKSSLVTPTFDSFTIQTASTTTKS* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1442 553 Gene3D - 139 252 IPR046357 GO:0003755
Lja1g1442 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 369 IPR001179 GO:0003755
Lja1g1442 553 SUPERFAMILY FKBP-like 141 222 - -
Lja1g1442 553 PANTHER PEPTIDYLPROLYL ISOMERASE 246 356 - -
Lja1g1442 553 Gene3D Tetratricopeptide repeat domain 372 528 IPR011990 GO:0005515
Lja1g1442 553 Gene3D - 254 371 IPR046357 GO:0003755
Lja1g1442 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 246 356 - -
Lja1g1442 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 48 136 IPR001179 GO:0003755
Lja1g1442 553 SUPERFAMILY FKBP-like 255 388 - -
Lja1g1442 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 255 - -
Lja1g1442 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 362 529 - -
Lja1g1442 553 SUPERFAMILY TPR-like 381 525 IPR011990 GO:0005515
Lja1g1442 553 ProSiteProfiles TPR repeat profile. 469 502 IPR019734 GO:0005515
Lja1g1442 553 SUPERFAMILY FKBP-like 25 136 - -
Lja1g1442 553 PANTHER PEPTIDYLPROLYL ISOMERASE 1 255 - -
Lja1g1442 553 PANTHER PEPTIDYLPROLYL ISOMERASE 362 529 - -
Lja1g1442 553 Gene3D - 21 138 IPR046357 GO:0003755
Lja1g1442 553 SMART tpr_5 435 468 IPR019734 GO:0005515
Lja1g1442 553 SMART tpr_5 386 419 IPR019734 GO:0005515
Lja1g1442 553 SMART tpr_5 469 502 IPR019734 GO:0005515
Lja1g1442 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 160 229 IPR001179 GO:0003755
Lja1g1442 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 277 366 IPR001179 GO:0003755
Lja1g1442 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 133 IPR001179 GO:0003755
Lja1g1442 553 Pfam Tetratricopeptide repeat 446 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1442 Lja-Chr1 15496953 15503074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1442 25 537 Calmodulin-binding Proteins AT5G48570 51.816 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1442 - - gmx:100785412 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1442 1 15496953 15503074 Lja1g1442 1 15496953 15503074 ECH