Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1430 ATGAGGGAAGACGATTCAAATTGGTTCGTTAGATGGGAAGAAGAGCTTCCTTCACCGGAGGAACTCATGCCGTTATCCCAAACCCTAATCACCCCTGATCTAGCCATGGCGTTTGACATCAGAAATTCTCTCACCGCCACCATCAACAACAACCCACAACAACAACACCAACAGCAGCAGCAGCTTCAGCTTCAGCAGCAACAGCAACCGCCGCTTTCTTCTAACCCTTCTTCTCTTCCTTCATCCGCCGATTTTGCTGATTCCGGCGAGCTGGGCTCCGGCAACGGCGGCGAGGAACCGGCCAGAACTCTCAAGAGGCCGCGCCTGGTTTGGACCCCGCAGCTCCACAAGCGGTTTGTTGACGCCGTGGCGCACCTTGGGATCAAGAACGCGGTTCCGAAGACCATAATGCAGCTCATGAGCGTTGATGGGTTGACCAGGGAAAACGTCGCTAGCCACCTGCAGAAGTATCGTCTTTACCTCAAGCGCATGCAGGGGATTTCCGCCGGTGGTCCCGGCGGCGGCGGTGCAGGACCGGCAGGCTCTGCTGACCCTACTGACCACCTCTTTGCTAGCTCCCCTGTGCCGGCTCATTTCTTGCATCCTACTGCCCGGCCTAATTCCGATCACTTCCTGCCGTTTGTGCCTGTGCCGGCTGCCCTCCACCACCACCATCAGCAGCAGCAACAGCAGCATCACTTGGCTGCGGCGGCGCAGTATCACCGGCCGGTGGGGCATTTCGGGTCGCCCCCGAATGGTCACTTTGAGAATCCCTTCCTGTCCAGGCAGCAGCAGCTTCATAGGATGGGGGCACCAGTGCACAACAACCCTGCTTTGTCTAGTTATGTGGAGGACATGGAATCTGCCAATGCATCAGGAGGGAGGAAGGTTCTTACTTTGTTTCCAACAGGAGATGATTGA 921 0.5668 MREDDSNWFVRWEEELPSPEELMPLSQTLITPDLAMAFDIRNSLTATINNNPQQQHQQQQQLQLQQQQQPPLSSNPSSLPSSADFADSGELGSGNGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAGGPGGGGAGPAGSADPTDHLFASSPVPAHFLHPTARPNSDHFLPFVPVPAALHHHHQQQQQQHHLAAAAQYHRPVGHFGSPPNGHFENPFLSRQQQLHRMGAPVHNNPALSSYVEDMESANASGGRKVLTLFPTGDD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1430 306 Gene3D - 103 165 - -
Lja1g1430 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Lja1g1430 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 306 IPR044841 GO:0003700|GO:0006355
Lja1g1430 306 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 306 - -
Lja1g1430 306 SUPERFAMILY Homeodomain-like 103 163 IPR009057 -
Lja1g1430 306 MobiDBLite consensus disorder prediction 51 84 - -
Lja1g1430 306 Pfam Myb-like DNA-binding domain 110 158 IPR001005 -
Lja1g1430 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 162 IPR017930 -
Lja1g1430 306 MobiDBLite consensus disorder prediction 51 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1430 Lja-Chr1 15302514 15304885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1430 1 306 G2-like Transcription Factor Family AT3G10760 57.307 4.76e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g1430 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1430 - - ccaj:109802866 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1430 1 15302514 15304885 Lja1g1430 1 15302514 15304885 ECH