Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1429 ATGCCTTCATCTTCGAATTCAAAGCAGAAGAAGCAATCAAAGTCGCACTCACGGTTACCACCGCCGTCAACCCCCGAACCCGCCGCCACACCTTCCGACACGCATCAACTCGCCGCTCTCTGCCAAGAAGCTTCTCGAACCTTCCCATCTTTCATCGCCGAATCCTCCTTCATCGGAGAAATCACCGACGTCGATACCGCCACCATTTCCAAGGGCTCCAAAATCTGGCTCTCTGAGCCTTCCATGGTTTCCTCTTCTATTGCCCCAGGCTCCATTGTCTCCGTGTCTATTCCGTCTTCAAGTAAAGGGAGTGAGCAATTGCGTGGCTTTCCTCTCGCGTCGTTGGGTGATGAATGTGTCAAATGCTTCGGATTGGAAGCTTGTAAGACTTTGGATGATTTCCCGGGAAACTACTTTGCGCTCGCGACCGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTCTTATACCCTGGGATGTCCTCCTCTGGGCAAAAGTGTTTTTGTACACCCTTTACAGAGACAGCACTTATCTGGTCTTTCAAATGGGGGCAATGAACTGCATTCAGTAGAAAATAATAGTTTATTAATATATAATTGCGATGAATTGTATCTTGAGTTGGCTCCTTGTAATGATGGACTGCCGCTGAGAGTTAATAACTCCCCCTTGTTGAACTTGTCTAAAGTGAAATCCCGTCTCCAATCTGAGAACCACATTGTTGCATCTCCTAAAACACCGTCTTATGGATCAAAATTTTCTAATGGTAGTGGGATGACTTCTCCAATATTTGAAGATTCAGCGTCAAGTGTAGCCAATCAGAATAGTCAGTCAGTGGTTTCATTTGATGTTAGAGAGGCATTAGGGGATGAAAGTTCCAAAAAGCTACTGCAGACATCTGCAACTTCATGCTTAAGTTCTCGTTGTTTACTTCTAGGGAATCTTGTCAATGTCCCTATGTTTTCAGAGTTGTGCATTTTTCAAGTGATAGGAGCTAAAAAGGTGCCAGTTTCCACACCTGATCATTATCCATCGAGTGGAAATGATAGTTTATACCTTGAAGATTCTGACATAGCTGAGAATGTTAATGTGGTTTTCACAACCAACTTTGAAACGAAGGTGTTTCTATCTCTGCCATCAAGTGCAGCATCAGAAGAGCCAATTCAAAGAGATTTATCTTCCGCTAAACTCAAACACAAGGTTGCTAATGCTACAATACAAGATAATATTTCTAAATTGGGTGGTCTATCTGAAGAGTACACACTTTTAAAGGATATAATTTCTTCATTGCTCATAGATGCTATATCGAGGTTCGGTTTACGAAGTACAAGAGGAGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAGTTATGTGCTCGTGATGTTGGGGTAAATTTTTTCCCAATAAATGGTCCTGAGATTGTTACCCAGTATTATGGAGAAAGTGAGCAAGCATTGCTTGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTTCTGTGGTATTTATTGATGAATTAGATGCTATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTACAACCTTATTGAATCTCATGGATGGAATTAGTAGAACAAAAGGGTTACTTGTAATTGCTGCCACTAATAGGCCTGACCATATTGAGCCAGCTCTTAGACGACCTGGAAGATTTGACAAGGAAATTGAAATCGGTGTGCCATCCCCTGTACAACGAAAAGAGATTTTGCATACTCTTCTCAATGAAATCGATCACTCTCTCAAAGACGAAGAAATTAATGACCTTGCCACAGTCACTCATGGTTTTGTGGGTGCTGATTTAGCTGCCCTTTGCAATGAGGCAGCCTTGATTTGTTTACGGCGTTATGCTAATTTTAAGAAGACTTATGATCCTTATTCTGATAACATAACGGAGCAACCTGGTCTGATGAATGGCGAAACACACTTGAGAGATCATTCAGGTGTTGTAACTTCATCTGTTTTAGATGAGACAGTGTCCTCCAGTCATGTATTACCTACCAGCACGATGGGAACAACTGAAATTATGGAAATGATTCCTGATAACTGTGATGAAAAACTAATGTTGAGAGTAATTTCTGAAGATTTTCAGAAAGCTAGGATGAAAATAAGACCCAGTGCCATGAGAGAGGTAATCCTTGAGGTTCCTAAGGTGAAGTGGGAAGATGTTGGAGGCCAAGATGAGGTCAAAACTCAATTGAGGGAAGCAGTGATATGGCCCCAGGAACACCATGATGCATTCACCCGTATTAGAGTTCGCCCTCCAACTGGTATATTATTGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGTGCAGTTGCTACTGAAGCTAGACTGAATTTTCTAGCAGTCAAGGGACCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCTTTGTTTGCAAAAGCAAGGGCCAATGCCCCTTCAATTGTATTTTTTGATGAAATAGATGGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGGGTTTCAGTGTCGGATAGGGTCATGAGCCAACTTCTTGTTGAAATGGATGGTCTGCATGAAAGAGTTCATGTTACTGTCATAGCTGCTACAAATAGGCCAGACAAGATCGACCCTGCCCTTTTAAGACCAGGACGCTTTGACCGGCTGCTATACGTTGGACCTCCAAATGAGATGGACAGAGAAAAGATATTTCACATTCATTTGCGTAAAATTCCACATGATTCGGACATTTGCCTTAACGAGCTGGCTCGGCTCACAAATGGCTGTACTGGGGCTGACATATCACTAATATGTCGGGAAGCCGCTGTTGCAGCTTTTGAGGAGAGTTTTGATGCTTCAGTTATAACAATGAAGCACTTAAAGATGGCAATCAAACAGGTTCAGCCTTCAGGAGTTCAGTCCTACCAAACACTGTCAGCAAAATTTCAAAGGGCTGTTCCCTCTTGTGATATAAAAGATGAATCCGATCACTGTTCTGATGTAAAAGATGAATCCAATCACTGTTCTAATGTAAAAGATGAATCCAATCATATGCAGTGCAAAAGTGGATCCACTTGGTTCAGCATTTGGAAGTTCATAAAATCTTTCACGTTCTTCTGA 3174 0.426 MPSSSNSKQKKQSKSHSRLPPPSTPEPAATPSDTHQLAALCQEASRTFPSFIAESSFIGEITDVDTATISKGSKIWLSEPSMVSSSIAPGSIVSVSIPSSSKGSEQLRGFPLASLGDECVKCFGLEACKTLDDFPGNYFALATVFPSSKVLKNGVRLSSNLSYTLGCPPLGKSVFVHPLQRQHLSGLSNGGNELHSVENNSLLIYNCDELYLELAPCNDGLPLRVNNSPLLNLSKVKSRLQSENHIVASPKTPSYGSKFSNGSGMTSPIFEDSASSVANQNSQSVVSFDVREALGDESSKKLLQTSATSCLSSRCLLLGNLVNVPMFSELCIFQVIGAKKVPVSTPDHYPSSGNDSLYLEDSDIAENVNVVFTTNFETKVFLSLPSSAASEEPIQRDLSSAKLKHKVANATIQDNISKLGGLSEEYTLLKDIISSLLIDAISRFGLRSTRGVLLHGPPGTGKTSLAQLCARDVGVNFFPINGPEIVTQYYGESEQALLEVFDSAIQAAPSVVFIDELDAIAPARKDGGEELSQRLVTTLLNLMDGISRTKGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPVQRKEILHTLLNEIDHSLKDEEINDLATVTHGFVGADLAALCNEAALICLRRYANFKKTYDPYSDNITEQPGLMNGETHLRDHSGVVTSSVLDETVSSSHVLPTSTMGTTEIMEMIPDNCDEKLMLRVISEDFQKARMKIRPSAMREVILEVPKVKWEDVGGQDEVKTQLREAVIWPQEHHDAFTRIRVRPPTGILLFGPPGCSKTLMARAVATEARLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVTRGKESDGVSVSDRVMSQLLVEMDGLHERVHVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEMDREKIFHIHLRKIPHDSDICLNELARLTNGCTGADISLICREAAVAAFEESFDASVITMKHLKMAIKQVQPSGVQSYQTLSAKFQRAVPSCDIKDESDHCSDVKDESNHCSNVKDESNHMQCKSGSTWFSIWKFIKSFTFF* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1429 1057 Gene3D - 741 988 IPR027417 -
Lja1g1429 1057 PANTHER AAA-FAMILY ATPASE 55 1010 - -
Lja1g1429 1057 CDD AAA 446 581 - -
Lja1g1429 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 641 IPR027417 -
Lja1g1429 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 987 IPR027417 -
Lja1g1429 1057 Pfam ATPase family associated with various cellular activities (AAA) 780 911 IPR003959 GO:0005524|GO:0016887
Lja1g1429 1057 Pfam ATPase family associated with various cellular activities (AAA) 452 581 IPR003959 GO:0005524|GO:0016887
Lja1g1429 1057 SMART AAA_5 776 914 IPR003593 -
Lja1g1429 1057 SMART AAA_5 448 584 IPR003593 -
Lja1g1429 1057 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g1429 1057 CDD AAA 746 912 - -
Lja1g1429 1057 Gene3D - 396 581 IPR027417 -
Lja1g1429 1057 PANTHER - 55 1010 - -
Lja1g1429 1057 Gene3D - 582 740 - -
Lja1g1429 1057 Pfam AAA+ lid domain 606 638 IPR041569 -
Lja1g1429 1057 Pfam AAA+ lid domain 935 979 IPR041569 -
Lja1g1429 1057 ProSitePatterns AAA-protein family signature. 882 900 IPR003960 GO:0005524|GO:0016887
Lja1g1429 1057 Gene3D - 913 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1429 Lja-Chr1 15289987 15297131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1429 1 1004 Calmodulin-binding Proteins AT3G56690 54.748 0.0 987
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1429 - - gmx:100788600 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1429 1 15289987 15297131 Lja1g1429 1 15289987 15297131 ECH