Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1428 ATGGCTTCAAGACCCGTCGTTCCTCAACAACCCAGAGGTGATGCAGTCGTTGGGGGAGGGAAGCAACAGCCGAAGAAGAACGGTGCAGCAGCGGGGAGGAACCGTAGAGCACTTGGTGATATTGGAAATTTGGATCCTGTTAGAGGAATTGAGGTCAAGCCTAATCGCCCAATCACAAGGAGTTTCTGTGCTCAACTACTTGCCAATGCACAAGCTGCAGTAGCTGCTGAAAACAACAAGAAACAGGCTTGTCCTAATGTGGCTGGACCTCCTGCTCCTGTTGCTGCTCCTGGAGTTGCAGTGGCTAAAAGAGAGGCCCCAAAACCAGTTACTAAGAGGGTCACTGGAAAACCAAAGCCTGTTGTGGAAGTCATTGAAATAAGCCCAGATGAACAGATCAAGAAAGAGAAATCTGTGCAGAAGAAGAAGGAAGATTCCAAGAAGAAAACTCTCACTTCTGTGCTCACTGCTCGAAGCAAGGCTGCATGTGGTTTAACTAACAAACCGAAGGAGGAGATTGTTGACATTGATGCTAGTGATGTTGACAATGAACTTGCTGCTGTGGAGTACATTGAAGATATCTACAAGTTCTATAAGATGGTTGAGAATGAGAGCCGTCCCCATTGCTACATGGCCTCACAACCTGAGATTAATGAGAAGATGAGAGCAATACTTGTTGATTGGCTGATAGATGTTCACACCAAGTTTGAGCTTTCACTTGAGACCCTTTACCTGACAATCAACATAGTTGATCGGTTCCTAGCTGTGAAGACTGTTCCAAGGAGGGAACTGCAATTGGTTGGCATCAGTTCTATGCTGATGGCCGCCAAGTATGAAGAAATCTGGCCCCCTGAGGTGAATGACTTTGTGTGCCTCTCAGACAGAGCTTATTCTCATGAGCAGATACTTGTGATGGAGAAAATCATTCTGGGGAGGTTGGAATGGACCTTGACTGTGCCTACACCCTTTGTTTTCCTAACTCGCTTCATCAAGGCTTCAGTTCCAGATGAGGGAGTGACAAACATGGCTCACTTTCTTTCTGAGTTGGGAATGATGCACTATGACACCTTGATGTATTGTCCATCAATGATTGCTGCCTCAGCAGTCTATGCAGCTAGGTGCACTCTGAACAAGAGTCCTGCTTGGAATGAAACACTGAAGCTGCACACTGATTACTCAGAAGAACAACTCATGGATTGTGCTAGATTGCTGGTGAGTTTCCATTGCACTGTTGGGAATGGAAAGCTGAAGGTTGTGTTTAGAAAGTACTCTGATCCTGAGAGAGGAGCTGTTGCAGTGCTTCCACCAGCTAAGAATCTTATGCCCCAAGAGGCTAGTAGCTAG 1344 0.4628 MASRPVVPQQPRGDAVVGGGKQQPKKNGAAAGRNRRALGDIGNLDPVRGIEVKPNRPITRSFCAQLLANAQAAVAAENNKKQACPNVAGPPAPVAAPGVAVAKREAPKPVTKRVTGKPKPVVEVIEISPDEQIKKEKSVQKKKEDSKKKTLTSVLTARSKAACGLTNKPKEEIVDIDASDVDNELAAVEYIEDIYKFYKMVENESRPHCYMASQPEINEKMRAILVDWLIDVHTKFELSLETLYLTINIVDRFLAVKTVPRRELQLVGISSMLMAAKYEEIWPPEVNDFVCLSDRAYSHEQILVMEKIILGRLEWTLTVPTPFVFLTRFIKASVPDEGVTNMAHFLSELGMMHYDTLMYCPSMIAASAVYAARCTLNKSPAWNETLKLHTDYSEEQLMDCARLLVSFHCTVGNGKLKVVFRKYSDPERGAVAVLPPAKNLMPQEASS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1428 447 Pfam Cyclin, C-terminal domain 320 436 IPR004367 -
Lja1g1428 447 Gene3D - 207 318 - -
Lja1g1428 447 Gene3D - 193 432 - -
Lja1g1428 447 SMART cyclin_7 227 311 IPR013763 -
Lja1g1428 447 SMART cyclin_7 324 406 IPR013763 -
Lja1g1428 447 MobiDBLite consensus disorder prediction 1 37 - -
Lja1g1428 447 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 22 442 - -
Lja1g1428 447 PANTHER CYCLINS 22 442 IPR039361 -
Lja1g1428 447 CDD CYCLIN 221 310 IPR013763 -
Lja1g1428 447 ProSitePatterns Cyclins signature. 222 253 IPR006671 -
Lja1g1428 447 SMART Cyclin_C_2 320 437 IPR004367 -
Lja1g1428 447 Pfam Cyclin, N-terminal domain 193 317 IPR006671 -
Lja1g1428 447 PIRSF Cyclin_A_B_D_E 1 447 IPR039361 -
Lja1g1428 447 SUPERFAMILY Cyclin-like 182 317 IPR036915 -
Lja1g1428 447 SUPERFAMILY Cyclin-like 319 438 IPR036915 -
Lja1g1428 447 CDD CYCLIN 318 405 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1428 Lja-Chr1 15286213 15288868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1428 1 441 Core Cell Cycle Gene Families AT4G37490 56.209 1.98e-157 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1428 K21777 - gmx:547920 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1428 1 15286213 15288868 Lja1g1428 1 15286213 15288868 ECH