Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1421 ATGAAGTCTGGGTCACTGGATCAGTGGAGGAGTTACTTTCGGTCTGCGAATTCGGACATATTTGATATAATTGATCATGCGATCATTGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGATTGAGAAGGGATTGGATTGCAGAGAGGCTCTTCTCTTGCAAGTTGACTCGTTGTTTGGGGTGTGATCGGGTGGAGTTAGCTGTTGCTGGTGATGGTGGTGAAGATGATGATGATCATGATGATGGAGGTTGTAAGATTGAAGCTGGGGCAAGCAAAGAGAGCAAGGCTAATGATGCTAGTGGAGATGATCATGGAGAGATGAACATGAACCCGGATAGCATTTATAGCTTTGGTGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATCTTGAAGAGGTTTTGAGGATCAAAGAACTTCTGCTTAGCTCTGAAGAAGCGAGTGACTCTGTGATATTTGATTCACTGAGGAGACTTCAGCTGATGGAACTCACTGTGGATCGTTTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAACATGGATCACAGGATATTCGTCAACTTGCTCGGACTCTTATCATTGGTTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTACAACAACAACAGTTATTGCAGCTTCAGAAGGTACACCAGATTCAGTGAATCCATCTGTTGTTGATGACGATGAAGAAGAAGGACTTCCATCACCTCCTTTGGATGAAGGGGCCTTCTTTGTTACTCAAGCTGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAACAAGAACCGTGAAAATGGCCGAAAGCCGGCTATGGACAATCAAGTTGTAGAAAAGAGGAAAGTTCAAGCTTCCAATGAAACAGCCTTCACATTCACTGCAAAGGACACGAAGAGTCAGCAAGCGAAGAAAAATGAGGCTTCTGTGAGGTTAAATAAACCAGTAACCGCTGATTCGGGCCCTGGCAGACCACCAAAATCAAATATGCAGAGAAAAGCCAGCGATGAGCCAAAGATGGCAGTGCAGCAAAAAATAGAGAACAATACAATCACAAGGAGGCCTCCCATTGTTCAGCAAAATAAATCTAAATGTTCAGATGATGCTGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAAGAGCGCTATCAACAAGCTGAAAATGCTAAGAGGCAGAGAACTATACAAGTTATGGAATTGAATGATCTTCCCAAGCAAGTGATTGCACACCGGAATCCTCATTTCAAATCTGGAAATCATAGGCAATGGGGACGAAAATAG 1341 0.4377 MKSGSLDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGCDRVELAVAGDGGEDDDDHDDGGCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFGEAEALTDEIEEESQYLEEVLRIKELLLSSEEASDSVIFDSLRRLQLMELTVDRLKATEIGKAVNPLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRQSGQFNKNRENGRKPAMDNQVVEKRKVQASNETAFTFTAKDTKSQQAKKNEASVRLNKPVTADSGPGRPPKSNMQRKASDEPKMAVQQKIENNTITRRPPIVQQNKSKCSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQVIAHRNPHFKSGNHRQWGRK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1421 446 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 215 IPR035441 -
Lja1g1421 446 Pfam TFIIS helical bundle-like domain 159 207 IPR017923 -
Lja1g1421 446 ProSiteProfiles TFIIS N-terminal domain profile. 135 210 IPR017923 -
Lja1g1421 446 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 443 IPR044805 -
Lja1g1421 446 MobiDBLite consensus disorder prediction 425 446 - -
Lja1g1421 446 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 443 - -
Lja1g1421 446 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 218 IPR035441 -
Lja1g1421 446 MobiDBLite consensus disorder prediction 82 102 - -
Lja1g1421 446 MobiDBLite consensus disorder prediction 300 319 - -
Lja1g1421 446 MobiDBLite consensus disorder prediction 70 108 - -
Lja1g1421 446 MobiDBLite consensus disorder prediction 222 247 - -
Lja1g1421 446 MobiDBLite consensus disorder prediction 362 385 - -
Lja1g1421 446 Coils Coil 382 416 - -
Lja1g1421 446 MobiDBLite consensus disorder prediction 264 388 - -
Lja1g1421 446 CDD TFIIS_I 135 208 - -
Lja1g1421 446 SMART TFS2_5 134 209 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1421 Lja-Chr1 15187471 15191767 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lja1g1421 Med26 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1421 - - gmx:100799367 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1421 1 15187471 15191767 Lja1g1421 1 15187471 15191767 ECH