Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja1g1421 | ATGAAGTCTGGGTCACTGGATCAGTGGAGGAGTTACTTTCGGTCTGCGAATTCGGACATATTTGATATAATTGATCATGCGATCATTGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGATTGAGAAGGGATTGGATTGCAGAGAGGCTCTTCTCTTGCAAGTTGACTCGTTGTTTGGGGTGTGATCGGGTGGAGTTAGCTGTTGCTGGTGATGGTGGTGAAGATGATGATGATCATGATGATGGAGGTTGTAAGATTGAAGCTGGGGCAAGCAAAGAGAGCAAGGCTAATGATGCTAGTGGAGATGATCATGGAGAGATGAACATGAACCCGGATAGCATTTATAGCTTTGGTGAAGCTGAGGCTTTGACTGATGAGATTGAAGAAGAGTCTCAGTATCTTGAAGAGGTTTTGAGGATCAAAGAACTTCTGCTTAGCTCTGAAGAAGCGAGTGACTCTGTGATATTTGATTCACTGAGGAGACTTCAGCTGATGGAACTCACTGTGGATCGTTTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCAGGAAACATGGATCACAGGATATTCGTCAACTTGCTCGGACTCTTATCATTGGTTGGAAAGAAATGGTAGATGAGTGGGTCAATGCTACAACAACAACAGTTATTGCAGCTTCAGAAGGTACACCAGATTCAGTGAATCCATCTGTTGTTGATGACGATGAAGAAGAAGGACTTCCATCACCTCCTTTGGATGAAGGGGCCTTCTTTGTTACTCAAGCTGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACAAAGTGGGCAATTCAACAAGAACCGTGAAAATGGCCGAAAGCCGGCTATGGACAATCAAGTTGTAGAAAAGAGGAAAGTTCAAGCTTCCAATGAAACAGCCTTCACATTCACTGCAAAGGACACGAAGAGTCAGCAAGCGAAGAAAAATGAGGCTTCTGTGAGGTTAAATAAACCAGTAACCGCTGATTCGGGCCCTGGCAGACCACCAAAATCAAATATGCAGAGAAAAGCCAGCGATGAGCCAAAGATGGCAGTGCAGCAAAAAATAGAGAACAATACAATCACAAGGAGGCCTCCCATTGTTCAGCAAAATAAATCTAAATGTTCAGATGATGCTGCGAAGCTAGAAGCCACTAAGAGGAAACTTCAAGAGCGCTATCAACAAGCTGAAAATGCTAAGAGGCAGAGAACTATACAAGTTATGGAATTGAATGATCTTCCCAAGCAAGTGATTGCACACCGGAATCCTCATTTCAAATCTGGAAATCATAGGCAATGGGGACGAAAATAG | 1341 | 0.4377 | MKSGSLDQWRSYFRSANSDIFDIIDHAIIVAASDCPKEFRLRRDWIAERLFSCKLTRCLGCDRVELAVAGDGGEDDDDHDDGGCKIEAGASKESKANDASGDDHGEMNMNPDSIYSFGEAEALTDEIEEESQYLEEVLRIKELLLSSEEASDSVIFDSLRRLQLMELTVDRLKATEIGKAVNPLRKHGSQDIRQLARTLIIGWKEMVDEWVNATTTTVIAASEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRQSGQFNKNRENGRKPAMDNQVVEKRKVQASNETAFTFTAKDTKSQQAKKNEASVRLNKPVTADSGPGRPPKSNMQRKASDEPKMAVQQKIENNTITRRPPIVQQNKSKCSDDAAKLEATKRKLQERYQQAENAKRQRTIQVMELNDLPKQVIAHRNPHFKSGNHRQWGRK* | 447 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja1g1421 | 446 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 133 | 215 | IPR035441 | - | |
Lja1g1421 | 446 | Pfam | TFIIS helical bundle-like domain | 159 | 207 | IPR017923 | - | |
Lja1g1421 | 446 | ProSiteProfiles | TFIIS N-terminal domain profile. | 135 | 210 | IPR017923 | - | |
Lja1g1421 | 446 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED | 3 | 443 | IPR044805 | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 425 | 446 | - | - | |
Lja1g1421 | 446 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED | 3 | 443 | - | - | |
Lja1g1421 | 446 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 126 | 218 | IPR035441 | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 82 | 102 | - | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 300 | 319 | - | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 70 | 108 | - | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 222 | 247 | - | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 362 | 385 | - | - | |
Lja1g1421 | 446 | Coils | Coil | 382 | 416 | - | - | |
Lja1g1421 | 446 | MobiDBLite | consensus disorder prediction | 264 | 388 | - | - | |
Lja1g1421 | 446 | CDD | TFIIS_I | 135 | 208 | - | - | |
Lja1g1421 | 446 | SMART | TFS2_5 | 134 | 209 | IPR003617 | GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja1g1421 | Lja-Chr1 | 15187471 | 15191767 | Transposed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Lja1g1421 | Med26 | 5.4e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja1g1421 | - | - | gmx:100799367 | 597.816 |